Pairwise Alignments

Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 762 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  325 bits (834), Expect = 1e-92
 Identities = 236/767 (30%), Positives = 387/767 (50%), Gaps = 31/767 (4%)

Query: 1175 PASGADPELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEI 1234
            P    D  LL++F  EA       +A L   +  P    ++E  +R  H+LKG AR+V +
Sbjct: 3    PEQMRDASLLELFSLEAEAQTQVLNAGLMALERNPTQADQLEACMRAAHSLKGAARIVGV 62

Query: 1235 APIGDLAHELEFLYEGLSAGLLAPSPE-LFALLQGCHDRLAQMIDAVADGLPVGSVDKLI 1293
                 +AH +E        G L  + E + ALLQG    L   I    D     ++   +
Sbjct: 63   DAGVSVAHVMEDCLVAAQEGRLRLTAEHIDALLQGTD--LLMRIATPGDAGAQATLPVFL 120

Query: 1294 ERIKTLVHPSDEPVTPVALPAGKAEAVVDPMADMVKISAELLDDLVNLAGETSIFRGRIE 1353
             ++ +L+ P    + PV  PA    A V P+A +      +  +      E ++ R   +
Sbjct: 121  AQMASLLDPGASAM-PVVPPA----ASVPPLATLPPAPMVMPAEPPEPEPEPALRRKAGK 175

Query: 1354 QQVNDARIALTEVETTIERMRDQLRRLDTETQGRILSRQQAEAERL------GYEDFDPL 1407
            +    A   L      +  + D   +   ETQ   L    A  +RL      G +  D L
Sbjct: 176  RAGEGAERVLRVTADRLNSLLDLSSKSLVETQR--LKPYLATLQRLKRMHGQGMQALDGL 233

Query: 1408 EMDRHS--QLQQLSRALSESASDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTR 1465
             M      Q  ++  AL+++   L + +  L+++  D  +   Q ++    L +  +  R
Sbjct: 234  RMQLEDTGQGNEVLEALAQTQRLLAETQRILQQQAADLDEFGWQASQRAQLLYDTALACR 293

Query: 1466 MVPFERMLPRLKRIVRQVAEELGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHG 1525
            M PF  +L    R+VR +   LGK V  +V   + ++DR+VLE++ APL H+LRNAVDHG
Sbjct: 294  MRPFADVLTGQSRMVRDLGRSLGKPVRLVVEGEKTQVDRDVLEKLEAPLTHLLRNAVDHG 353

Query: 1526 LESRDARLLAGKPEKGRITLDLTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGL--LDPN 1583
            +E  + RLLAGKP++G I L  +H+ G +  ++ DDGAG+ LE +R   ++R L   D  
Sbjct: 354  IELPERRLLAGKPDEGVIRLRASHQAGMLSLELIDDGAGIDLERLRSSIVERALSPADTV 413

Query: 1584 QDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFR 1643
              +S+ ++L F+  PGFS  +K+T++SGRGVG+D V   +R+L GS+ +    G+G  F 
Sbjct: 414  ARMSEAELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHLIRELRGSIELTQVAGQGCRFH 473

Query: 1644 IRLPFTVSVNRALMVQCADDQYAIPLNTIEGLVRVLPHELAGHYQQDPPRYEYAGQRYEL 1703
            +++P T+SV R+L+V+   + YA PL  IE  + V   ++     +    + + G+   L
Sbjct: 474  LQVPLTLSVVRSLVVEVGGEAYAFPLAHIERTLEVTAEQIV--QIEGRQHFWHEGRHIGL 531

Query: 1704 FYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGVQ 1763
                 LL   +RP        + V++++  E+   + V+ + G R +VV  L P+   VQ
Sbjct: 532  VAASQLL---NRPAGQSDEASLRVVVIREREQLYGVAVERLVGERVLVVMPLDPRLGKVQ 588

Query: 1764 GLSGATILGDGRVVLIIDLLAHIRARQPALPAQTADLPLILNDPLKKRPLL---VLVVDD 1820
             +S   +L DG VVLI+D+   +R+ +  L   T  L  I       R ++   +LVVDD
Sbjct: 589  DISSGALLDDGSVVLIVDVEDLLRSLEKLL--STGSLERIERGSSGARGVVRKRILVVDD 646

Query: 1821 SVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEHTPDLMLLDIEMPRMDGFEVATQVRN 1880
            S+TVR++  +LL   G +V  A DG+D    L     DL++ DI+MPRMDG E+ T VR 
Sbjct: 647  SLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDGIELVTLVRR 706

Query: 1881 DPRLMRLPIIMITSRTGQKHRDRAMAIGVNDYLGK-PYQESVLLESI 1926
            D RL  LP+++++ +  ++ R R +  G + YL K  + +  LL+++
Sbjct: 707  DQRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 753



 Score = 42.7 bits (99), Expect = 2e-07
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 1038 ETERDDEIVEIFLEEA---VDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMA 1094
            E  RD  ++E+F  EA     +L++   +L+R    P  A  L +  R  H+LKG AR+ 
Sbjct: 4    EQMRDASLLELFSLEAEAQTQVLNAGLMALER---NPTQADQLEACMRAAHSLKGAARIV 60

Query: 1095 EIEAIGDLAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDSAEL 1154
             ++A   +AH +E       + R   TAE    L+   + L +++         +     
Sbjct: 61   GVDAGVSVAHVMEDCLVAAQEGRLRLTAEHIDALLQGTD-LLMRIATPGDAGAQATLPVF 119

Query: 1155 IARVRALRQGSAPAAPAAAPPAS 1177
            +A++ +L    A A P   P AS
Sbjct: 120  LAQMASLLDPGASAMPVVPPAAS 142



 Score = 42.0 bits (97), Expect = 3e-07
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 747 DPMLLEIFRNEAQSHLDSLNHFLHQAAEHVPLQVSDELQ---RALHTLKGSAYMAGVLPI 803
           D  LLE+F  EA++    LN  L  A E  P Q +D+L+   RA H+LKG+A + GV   
Sbjct: 8   DASLLELFSLEAEAQTQVLNAGL-MALERNPTQ-ADQLEACMRAAHSLKGAARIVGVDAG 65

Query: 804 AELARPLDHLTREYKAHRLPLDLDEVELLLEAEGLFQR 841
             +A  ++      +  RL L  + ++ LL+   L  R
Sbjct: 66  VSVAHVMEDCLVAAQEGRLRLTAEHIDALLQGTDLLMR 103



 Score = 32.0 bits (71), Expect = 3e-04
 Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 25/159 (15%)

Query: 613 EEPIDDELREVFLEETDEVLEVLHRNL------PNSADKIAQGEMRRAFHTLKGSGRMVR 666
           E+  D  L E+F  E +   +VL+  L      P  AD++      RA H+LKG+ R+V 
Sbjct: 4   EQMRDASLLELFSLEAEAQTQVLNAGLMALERNPTQADQLEA--CMRAAHSLKGAARIVG 61

Query: 667 ALVLAELAWAVENLLNRVLERSVTLGPDVQQVLDE---------------AVALLPELIA 711
                 +A  +E+ L    E  + L  +    L +               A A LP  +A
Sbjct: 62  VDAGVSVAHVMEDCLVAAQEGRLRLTAEHIDALLQGTDLLMRIATPGDAGAQATLPVFLA 121

Query: 712 DFA--IDDQRQRDEVDALAARAHALASGMPVPAAEPHDP 748
             A  +D       V   AA    LA+  P P   P +P
Sbjct: 122 QMASLLDPGASAMPVVPPAASVPPLATLPPAPMVMPAEP 160