Pairwise Alignments

Query, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  296 bits (759), Expect = 1e-84
 Identities = 163/384 (42%), Positives = 237/384 (61%), Gaps = 13/384 (3%)

Query: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           FA+  L+  ++ A+ A GY EP+ +QQ++IP ++ G+D++  AQTGTGKT  FALPIL  
Sbjct: 8   FAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHC 67

Query: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSA-CIFGGVGMNP 121
           + P            R+P+ L+L PTRELA QV  +F+ YA+ +  V+   ++GG  M P
Sbjct: 68  IDP----------AKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGP 117

Query: 122 QVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q++A+  G  ++VA PGRL D   +    LS V  LVLDEAD ML +GF+ D++ +   L
Sbjct: 118 QLKAIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKAL 177

Query: 182 PAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLA 241
           P  RQ +LFSAT  Q I A+A + L +PE +++     TV  IEQ    + A  K + + 
Sbjct: 178 PPTRQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVL 237

Query: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVR 301
            L+    ++ +++F RTK     LA  L+  G  A A++G+ +QN R + +   K G + 
Sbjct: 238 SLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297

Query: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
           I+VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357

Query: 362 KSIERMTKQKIADGDLMGFDASAV 385
           + IER+T QK+A+  L   DA AV
Sbjct: 358 QVIERVTGQKVAEVRLP--DAQAV 379