Pairwise Alignments

Query, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  486 bits (1252), Expect = e-142
 Identities = 264/471 (56%), Positives = 327/471 (69%), Gaps = 20/471 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGL+  ++RAI   GY EPTP+QQ+AIPAVLQGRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120
           E L  N    +    G R  R L+LTPTRELAAQ+ ++ + Y+R L   S  +FGGV +N
Sbjct: 61  ELLVKN----QPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSIN 116

Query: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  +  GVDVL+A PGRLLDL  Q +V L  +EILVLDEADRMLDMGF+HD+++VLA+
Sbjct: 117 PQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAK 176

Query: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240
           LPA+RQNLLFSATFS +I ALA KLLHNP  +EV   NT  E++ Q V  +    KR LL
Sbjct: 177 LPARRQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELL 236

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300
           + +I  G W+QVLVFTRTKHGAN LAE L+K G+ + AIHGNKSQ ART+ALADFK+G +
Sbjct: 237 SQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGG---- 416
           L+ IER+ K++I   +  G++        P  +  P ++N R   G +G G  G G    
Sbjct: 357 LRDIERLLKKEIPRIETPGYEVD------PSIKAEP-IQNGRQGGGGRGQGGGGRGQQPR 409

Query: 417 --GGGGRRDKGKDKGKEKSASGRGERPAR--EQKPR-EGTPAREQRQPSQP 462
              GG  +  GK   +   +   GE P R  E KP  EG   R  R+P+ P
Sbjct: 410 RAEGGAPKSSGKPPRRNNDSKPAGENPWRSGEGKPAGEGQRRRRPRKPANP 460



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 520 QGGRQNGP-RNSSGGTTGTPPAKRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSE- 577
           Q GRQ G  R   GG  G  P +  G   GAP+   + +   R+N+ +PA ++  RS E 
Sbjct: 388 QNGRQGGGGRGQGGGGRGQQPRRAEG---GAPK--SSGKPPRRNNDSKPAGENPWRSGEG 442

Query: 578 -PAVQNPR 584
            PA +  R
Sbjct: 443 KPAGEGQR 450