Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 776 a.a., DNA ligase from Pseudomonas putida KT2440

 Score =  147 bits (370), Expect = 2e-39
 Identities = 151/598 (25%), Positives = 260/598 (43%), Gaps = 79/598 (13%)

Query: 25  TARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLT-----HWRRCFPESPPKPD 79
           TA  ++  L  ++   +  Y+ L++  V D  YD+    L      H     P+SP +  
Sbjct: 2   TAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRV 61

Query: 80  NPLA-SSRGTLRHPIAHTGLEKLLDEQAV---------GAWLSTRQDVWIQPKVDGVAVT 129
              A ++   +RH +    L    +E  +         G       D   +PK+DG+AV+
Sbjct: 62  GGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAVS 121

Query: 130 LVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPE---PIDLVLQGELYWHLD--- 183
           L+YR G+L Q  +RGDG  G D SA+ R +  I  +L     P  L ++GE+Y       
Sbjct: 122 LLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFD 181

Query: 184 --DHVQSANGG---LNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTER----- 233
             +  Q+  GG    N R+  AG + +L+     +  +    +    G G  +E      
Sbjct: 182 RLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCY----GVGQVSESIGDSH 237

Query: 234 ---LAALARWGFTDSRRYSQPIRDIAEATHWRAYWYN-----HPLPFASDGVVLHQAQRP 285
              L  L  WG   SR     ++  A      AY+ +     + LP+  DGVV       
Sbjct: 238 IGILEQLKAWGLPISRE----LKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLA 293

Query: 286 PARR--WKASEPYWAVAWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISR 343
             R   ++A EP WA+A K+PA + L  V +V F++GRTG +TP+  L+PV++    +S 
Sbjct: 294 AQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSN 353

Query: 344 VSAGSLKRWQTLDIRPGDQVSISLAGQVIPRLDEVIL----RNAHRADLAAPDPRDFHAL 399
            +  ++     L +R GD V I  AG VIP++ +V+L    + A   ++ +  P     +
Sbjct: 354 ATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQV 413

Query: 400 SCWQLDP--------------------GCEEQLLARLTWLSGNQGLALPHIGRETWNVLI 439
              +L                       C  QL   +      + + +  +G ++   L+
Sbjct: 414 ERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLV 473

Query: 440 QAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSARQRSFAQWLKALGVPPAARN 499
             GLI S  D   L   ++  +EGF + S  ++L+++ ++++ S A+++ ALG+P     
Sbjct: 474 DEGLIGSPADLYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEE 533

Query: 500 NLEGDWQTL--VARDTQA----WLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551
             +   ++L  +AR  QA       +  IG   A ++  FF D   Q +   L  +G+
Sbjct: 534 TAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGM 591