Pairwise Alignments

Query, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

Subject, 561 a.a., DNA ligase (EC 6.5.1.2), LigB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  422 bits (1086), Expect = e-122
 Identities = 213/543 (39%), Positives = 316/543 (58%), Gaps = 21/543 (3%)

Query: 23  PDTARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQAHQRLTHWRRCF-------PESP 75
           P  A  ++  L +Q+  W+D Y +   S V D +YDQ   RL  W+RC        P SP
Sbjct: 27  PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTPVSP 86

Query: 76  PKPDNPLASSRGTLRHPIAHTGLEKLLDEQAVGAWLSTRQDVWIQPKVDGVAVTLVYRQG 135
           P          GT  HP+AHTG+ KL+D QAV  W+  R ++W+QPKVDGVAVTLVY+ G
Sbjct: 87  PL--------NGTTMHPVAHTGVRKLVDRQAVEQWMRGRSELWVQPKVDGVAVTLVYQNG 138

Query: 136 RLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPI-DLVLQGELYWHLDDHVQSANGGLN 194
           +L + ISRG+GL G DW+   R IP I Q     + + VLQGE++   + H+Q   GG+N
Sbjct: 139 KLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQGEIFLQREGHIQQRMGGMN 198

Query: 195 ARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERLAALARWGFTDSRRYSQPIRD 254
           ARSKVAG++ R + + A    +G+F+WAWP+GP +  ERL+ LA+ GF+ + +Y+  ++D
Sbjct: 199 ARSKVAGMLMRQDNASA-LNSLGIFIWAWPDGPANMPERLSQLAKAGFSLTNKYTLAVKD 257

Query: 255 IAEATHWRAYWYNHPLPFASDGVVLHQAQRPPARRWKASEPYWAVAWKYPAAKALALVRN 314
            +E    R  W    LPF +DGVV+  A+ P ++ W+  +  W  AWKYP    +A V  
Sbjct: 258 ASEVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDWLAAWKYPPVAQVAQVSA 317

Query: 315 VRFKIGRTGRITPMLELEPVQLDDRQISRVSAGSLKRWQTLDIRPGDQVSISLAGQVIPR 374
           ++F +G++G+IT +  L PV LDD+++ RV+ GS+KRW+  DI PGDQ+ +SLAGQ IPR
Sbjct: 318 IQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDIAPGDQILVSLAGQGIPR 377

Query: 375 LDEVILRNAHRADLAAPDPRDFHALSCWQLDPGCEEQLLARLTWLSGNQGLALPHIGRET 434
           LDEV+ R+  R+    PD   F++L+C+     C+EQ ++RL WL     L L  +G  +
Sbjct: 378 LDEVVWRSRERSKPVPPDSH-FNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEAS 436

Query: 435 WNVLIQAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSARQRSFAQWLKALGVP 494
           W  L Q         WLTL  A++AN  GF      ++    N AR++ F +W+ A+ +P
Sbjct: 437 WRALHQTHRFEHIFSWLTLTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIP 496

Query: 495 ---PAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPQVQALADTLRVAGI 551
               A + + +  W+ L+ R  Q W  +   G  RA ++  +  + Q++AL+  L    I
Sbjct: 497 LTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRNNLQIKALSRWLAAQHI 556

Query: 552 DGF 554
            GF
Sbjct: 557 PGF 559