Pairwise Alignments

Query, 461 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  761 bits (1965), Expect = 0.0
 Identities = 380/461 (82%), Positives = 419/461 (90%)

Query: 1   MTTIATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAF 60
           MTT +TAF TLPLS AMLANL++LGY  MT IQAQSLPVILKG DLIAQAKTGSGKTAAF
Sbjct: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60

Query: 61  GIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIA 120
           GIGLLNPINPRYFGCQALV+CPTRELADQVAKE+RRLARAEDNIK+LTLCGGVSLGPQIA
Sbjct: 61  GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA 120

Query: 121 SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPR 180
           SLEHGAH+IVGTPGRIQQHL KG+LVLDGLNTL+LDEADRMLDMGF+DAI  II KTP R
Sbjct: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180

Query: 181 RQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQIEQRFYEISPEERMDAVTKVLA 240
           RQTLLFSATYP  IKQLA+ FMR PQQVK E+ H+D+QIEQRF EI P++R++AVT+VL 
Sbjct: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLG 240

Query: 241 HFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300
           H+RP SCVAFCFTKQQ ++ V HLT+KGI A  LHGDLEQRDRDQVL MFANRS+SVLVA
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE 360
           TDVAARGLDID LDMVINVELARD+EIH+HRVGRTGRAGE G+A+SLVAP+E HRAQAIE
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 361 QLQKSPLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQV 420
            LQ SPL WDQLD+LK + G PLLP M+TLCIAAGRKDK+RPGDILGALTG+AGIPG QV
Sbjct: 361 ALQNSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV 420

Query: 421 GKIAIFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVRIL 461
           GKIAIFDFQAFVAVER +AKQA+QRLN GKIKGR+L+VRI+
Sbjct: 421 GKIAIFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461