Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  140 bits (353), Expect = 1e-38
 Identities = 72/156 (46%), Positives = 96/156 (61%)

Query: 12  VGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREPRAFLMAIAKGL 71
           V  LY  H  WL  WLRR + CP  A DL+QDT+MRLL   E     EPRAFL  +AK +
Sbjct: 15  VEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAKRV 74

Query: 72  LFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYN 131
           L ++FRR  LE+AYL  L  +PE   P  E++ +I E L A+D LL  L    + AFL  
Sbjct: 75  LCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLA 134

Query: 132 RLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIAL 167
           ++DG+G  EIA+ LG+S+  V++YL +   +CY AL
Sbjct: 135 QVDGLGQGEIARELGISLATVKRYLNKAAMRCYFAL 170