Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  143 bits (360), Expect = 2e-39
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query: 12  VGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREPRAFLMAIAKGL 71
           V  LY+ H  WL  WLR  V C   A DL+QDTF+RLL   ++   +EPRA+L +IA+GL
Sbjct: 12  VALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGL 71

Query: 72  LFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYN 131
           + D FRR ALE+AY   L  +PE+E PS E++ +IL+ L+ +DR L +L  + R AFL  
Sbjct: 72  MIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLA 131

Query: 132 RLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGE 170
           +LDG+   ++AQRLGVS   V + LA+ +  CY   Y +
Sbjct: 132 QLDGLSIVQVAQRLGVSRATVERDLAKALGACYRLRYAD 170