Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  206 bits (525), Expect = 1e-57
 Identities = 97/234 (41%), Positives = 157/234 (67%)

Query: 379 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 438
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 96  RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 155

Query: 439 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIR 498
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EP+PEE+   +E P  +++
Sbjct: 156 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVK 215

Query: 499 KVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTARE 558
           ++L + +   S++  +G D D  L D + D     P ++   + L ++    LS LT ++
Sbjct: 216 RMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQ 275

Query: 559 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRS 612
            +V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++LR       L S
Sbjct: 276 REVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSS 329



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 14/78 (17%)

Query: 65  DSLMLADADTDEAAAEEAAAALAAVET--------------DIGRTTDPVRMYMREMGTV 110
           D ++L +A  D  +      A+ +V T              D  R  D  ++Y+ E+G  
Sbjct: 14  DEVLLMEAGIDTESMSNEGPAVPSVRTKSKNSTALKQHKYIDYTRALDATQLYLNEIGFS 73

Query: 111 ELLTREGEIEIAKRIEEG 128
            LLT E E+  A+  ++G
Sbjct: 74  PLLTPEEEVHFARLSQKG 91