Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

 Score =  532 bits (1371), Expect = e-155
 Identities = 312/657 (47%), Positives = 414/657 (63%), Gaps = 52/657 (7%)

Query: 8   QSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE---AAPDK 64
           ++ +K+LI   +++GY+TY E+ND LP+D    EQ+EDI+  +N+MG+N+ E   A+ D 
Sbjct: 27  EASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDG 86

Query: 65  DSLM----LADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE 120
           D         DAD D +  +         +  + RT DPVRMY+REMG VELL+REGEI 
Sbjct: 87  DEQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIA 146

Query: 121 IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLS--------------- 165
           IAKRIE G   ++  +   P T + I+   T +     +L ++L                
Sbjct: 147 IAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILDLDAMLSKDPAPENME 206

Query: 166 -GYIDPDDGIAPPAA--EVPPPVDAKAAKADDDTEDDDAEASGDDEDEVESGPDPI---- 218
            G  D D  I+   A        + +   AD D ++D A  +  +EDE E     +    
Sbjct: 207 EGAEDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQME 266

Query: 219 -----IAAQRFGAVSDQMEITRKALKKH--GRANKQAIAELVA---------LAELFMPI 262
                +A ++F  +++      KA +      AN +++++            L      +
Sbjct: 267 ETLKPMALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEVESV 326

Query: 263 KLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMPRADFLRQFPGNEVDESWTD-- 320
           +   ++ E LV+++ +   RL A    +++L  R  ++ R DFL ++ G+E+D++W +  
Sbjct: 327 QFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAERH-KVSRKDFLERYMGHELDDAWLEKV 385

Query: 321 -ALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEIKDINRRMSIGEAKARRAK 379
             L K  A +A A GR    + R + +++ +   TG++++E + I   +  GE +AR AK
Sbjct: 386 QGLDKKWAAFAAAEGRA---VERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIAK 442

Query: 380 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 439
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 443 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 502

Query: 440 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRK 499
           QAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+ ER+ MP +K+RK
Sbjct: 503 QAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRK 562

Query: 500 VLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREA 559
           V+KIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +LKE    VL+ LT RE 
Sbjct: 563 VMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREE 622

Query: 560 KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE 616
           +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  +RSFLD+
Sbjct: 623 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 679