Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  204 bits (519), Expect = 5e-57
 Identities = 96/234 (41%), Positives = 156/234 (66%)

Query: 379 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 438
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 97  RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 156

Query: 439 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIR 498
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EP+PEE+   +E P  +++
Sbjct: 157 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVK 216

Query: 499 KVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTARE 558
           ++L + +   S++  +G D D  L D + D     P ++   + L ++    L  LT ++
Sbjct: 217 RMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQ 276

Query: 559 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRS 612
            +V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++LR       L S
Sbjct: 277 REVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSS 330



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 92  DIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEG 128
           D  R  D  ++Y+ E+G   LL+ E E+  A+  ++G
Sbjct: 56  DYSRALDATQLYLNEIGFSPLLSPEEEVHFARLSQKG 92