Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score = 1053 bits (2722), Expect = 0.0
 Identities = 543/617 (88%), Positives = 572/617 (92%), Gaps = 2/617 (0%)

Query: 1   MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA 60
           MSGKAQQQSRIKELI  GREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE+
Sbjct: 1   MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES 60

Query: 61  APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE 120
           APD D+L+LA+ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
Sbjct: 61  APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE 120

Query: 121 IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE 180
           IAKRIEEGIREVMGAIAHFPGTVD+IL EY RVTTEGGRLSDVLSGYIDPDD IA P  E
Sbjct: 121 IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEE 180

Query: 181 VPPPVDAKAAKADDDTEDDDAEA-SGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALK 239
           VP P  AKAA A ++++DD+ E+ SGDDE+E ESGPDP++AAQRFGAVSDQ++ T K LK
Sbjct: 181 VPIP-GAKAAAAKEESDDDEEESESGDDEEEAESGPDPVVAAQRFGAVSDQLQATSKVLK 239

Query: 240 KHGRANKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDAR 299
           K+GR +K++I  L ALA+LFMPIKLVPKQFE LVERVR AL RLR QERAIMQLCVRDAR
Sbjct: 240 KNGRNHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDAR 299

Query: 300 MPRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIA 359
           MPRADFLR FP NE D++W+  LAK   K+A A+G     I+ CQQKL  LETETGLT+A
Sbjct: 300 MPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKNAAIVACQQKLIDLETETGLTVA 359

Query: 360 EIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 419
           EIK+INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
Sbjct: 360 EIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 419

Query: 420 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 479
           DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
Sbjct: 420 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 479

Query: 480 EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVAT 539
           EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVAT
Sbjct: 480 EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVAT 539

Query: 540 VESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 599
           VESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
Sbjct: 540 VESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 599

Query: 600 KLRHPTRSEHLRSFLDE 616
           KLRHPTRSEHLRSFLDE
Sbjct: 600 KLRHPTRSEHLRSFLDE 616