Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC62

 Score =  211 bits (537), Expect = 4e-59
 Identities = 105/255 (41%), Positives = 168/255 (65%), Gaps = 3/255 (1%)

Query: 356 LTIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 415
           LT  E     RR   G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL
Sbjct: 71  LTAEEEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127

Query: 416 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 475
           ++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  
Sbjct: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187

Query: 476 EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPI 535
           ++  EP+ EE+ E+++ P D + ++L++ +   S++TP+G D +  L D + D     P 
Sbjct: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247

Query: 536 DVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 595
           D    + +K++    L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ 
Sbjct: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307

Query: 596 KALRKLRHPTRSEHL 610
           + LR+LR   +++ L
Sbjct: 308 EGLRRLREILQTQGL 322



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 51  NDMGINVFEAAPDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTV 110
           ++ G+ VF+     +  ++ +  +D   AEE   +  A +    R  D  ++Y+ E+G  
Sbjct: 18  DENGVEVFD-----EKALVEEEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYS 68

Query: 111 ELLTREGEIEIAKRIEEG 128
            LLT E E+  A+R   G
Sbjct: 69  PLLTAEEEVYFARRALRG 86