Pairwise Alignments

Query, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score =  811 bits (2096), Expect = 0.0
 Identities = 418/611 (68%), Positives = 495/611 (81%), Gaps = 7/611 (1%)

Query: 8   QSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDSL 67
           QS++K L+  G+EQGYLTYAEVNDHLPEDI D +Q+EDII+MINDMGI V E APD D L
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 68  MLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEE 127
           MLA+   DE AAE AA  L++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRIE+
Sbjct: 66  MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125

Query: 128 GIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDP--DDGIAPPAAEVPPPV 185
           GI +V  ++A +P  + ++L +Y RV     RLSD+++ ++DP  ++ +AP       P 
Sbjct: 126 GINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITAFVDPNAEEDLAPNTT----PE 181

Query: 186 DAKAAKADDDTEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKKHGRAN 245
           +A+ A    D +DD++E   DD D+ ++  DP +A Q+F  + DQ E TR ++K HGR++
Sbjct: 182 NAEPADDGIDDDDDESEEDEDDTDD-DNSIDPELARQKFAELRDQYEATRVSIKAHGRSH 240

Query: 246 KQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMPRADF 305
             AI E+  L+E+F   +LVPKQF+ LV  +R+ ++R+RAQER IM+LCV   +MP+ +F
Sbjct: 241 PTAIDEINKLSEVFKQFRLVPKQFDLLVNNMRAMMDRVRAQERQIMKLCVELCKMPKKNF 300

Query: 306 LRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEIKDIN 365
           +  F GNE +  W DA       + E +  ++ D+ R  QKL  +E ETGLTI ++KDIN
Sbjct: 301 VTLFTGNETNRKWFDAALSMGKPWCEKLREVEDDVHRGLQKLQQIEDETGLTIEQVKDIN 360

Query: 366 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 425
           RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 361 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 420

Query: 426 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 485
           RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
Sbjct: 421 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 480

Query: 486 LGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKE 545
           L ERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P+D AT ESL+ 
Sbjct: 481 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS 540

Query: 546 ATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPT 605
           AT DVL+GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP+
Sbjct: 541 ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 600

Query: 606 RSEHLRSFLDE 616
           RSE LRSFLD+
Sbjct: 601 RSEVLRSFLDD 611