Pairwise Alignments

Query, 936 a.a., LPS biosynthesis protein from Pseudomonas simiae WCS417

Subject, 800 a.a., LPS assembly protein LptD from Erwinia tracheiphila SCR3

 Score =  333 bits (855), Expect = 2e-95
 Identities = 240/811 (29%), Positives = 381/811 (46%), Gaps = 84/811 (10%)

Query: 139 TRPGMNDKTNKSDAPTFIGAKASRYEQEQQVATLAGDVVMRQGSMQLESEEASLYQAENR 198
           TRP +  K N +D P  I A  ++       A   G+V ++QG+ +L+S+E  L+Q + +
Sbjct: 51  TRPLIQGKNN-NDLPVTINADQAKGRYPDN-AVFTGNVDVQQGNGRLQSDEIQLHQKQVQ 108

Query: 199 GELN--------GKVRLRDNGALIVGDHAEVQLDTGAAQIDNAEYVLHKSRIRGNALYAK 250
           G+          G V   D+  ++ G      L+T    + N +Y +   + RG A   K
Sbjct: 109 GQTTLVRTVDALGNVHYDDDQVVLRGPKGWSNLNTKDTNVWNGDYQMVGRQGRGTADQMK 168

Query: 251 -RAENAIIRLKDGTYTTCEPDSNAWQLRGNNITLNPATGFGTATNATLRIKNIPILYTPY 309
            R +N    L++GT+T+C P  N+W + G +I  +         NA  RI  +P+LY+PY
Sbjct: 169 LRGQNRYTILENGTFTSCLPGDNSWSVAGTHIIEDREEQVAEIWNARFRIGKVPVLYSPY 228

Query: 310 IYFPIDDRRQSGFLPPSFSTGSETGFTLVTPYYFNLAPNYDATLYPQYMTKRGLLMEGEF 369
           +  PI DRR+SGFL P+    S  GF  + PYY+N+AP  DAT+ P YM+ RG  ++ EF
Sbjct: 229 LQLPIGDRRRSGFLIPNAKYDSSNGFEFILPYYWNIAPQVDATITPHYMSNRGTQLQNEF 288

Query: 370 RYLTKSSEGQFGGAYLNDDND------ERSKQTDYEKTRYMLNWQHRGGLDSRLATQVDY 423
           RYLTK+ EG     YL  D         R+     +  R+M  W+H G  D      +DY
Sbjct: 289 RYLTKAGEGLMEFDYLPSDRQYTKDATSRNITNSDDSDRWMFTWKHNGVYDQNWRFNIDY 348

Query: 424 TRISDPYYFQDLKSFQEGVESRDA-LNQQGSVTYRGDSYQARLNVQAYQL-ATISQITPY 481
           T++SD YYF DL+S      S D  + Q+ SV Y   ++ A L+ + +Q+ +T +    Y
Sbjct: 349 TKVSDVYYFTDLES--PYASSTDGYVTQKFSVGYAEQNWDATLSTKQFQIFSTQTNNDVY 406

Query: 482 DRLPQITFNGALPYHPGGLNFTYETEAVRFERSL--EKGTFTDQDGLVSPRLDTYVTGLT 539
              PQ  FN             Y+ +   F+  L  +   FT+ +       + Y     
Sbjct: 407 RAEPQFDFN------------YYQNDVGPFDTHLYAQAVKFTNVN-------EAY----- 442

Query: 540 RANGTRLNVAPAVDYPMNWTYGFITPKLKYVYTKYDLDLDSIGKNQIIAQQAAATAANPY 599
             +  RL++ P ++ P++  +G +  + K + T Y        +N I     +  ++   
Sbjct: 443 -PDAIRLHLEPTINLPLSNHWGSLNTEAKLLATHYQ-------QNDIEYWNESVDSSKV- 493

Query: 600 AGGDFKSSQDRAVPVASVDSGLYFDRNTNWFGKDYRQTLEPRAFYLYVPNKDQSDIPVFD 659
                KSS +R +P   VD  + FDR+ +W    Y QTLEPR  YLYVP +DQSDI  +D
Sbjct: 494 --NQLKSSVNRVMPQFKVDGKMVFDRDMDW-SPGYTQTLEPRVQYLYVPYRDQSDIRAYD 550

Query: 660 TSEYSFSYASLFRDNRFSGSDRIGDENKLSLGLTSRWIEENGFERQRVSVGQAVYFKDRE 719
           ++     Y  LFRD  +SG DRI   N+++ G+T+R  + +  ER   SVGQ   F    
Sbjct: 551 STLLQSDYTGLFRDRTYSGLDRIPSANQITTGVTTRIFDNDLVERFNASVGQIYSFTPSR 610

Query: 720 VQLPGILAADRADAQSDVSPVALDYEFRFNRDWRATADYNWDTEEHSPRSGSAMLHYQPE 779
             L    + DR   +      A D  ++ +  W A     +DT   +   GSA+L Y+ +
Sbjct: 611 TGLETTDSDDRGSIE-----WAGDSFWKISERWNARGGVQYDTRLRTVSQGSAVLEYRRD 665

Query: 780 DNPNKIINVGYRYRNDQVVYNQLTGKWQFGGDYGQPGDPNFVKDYYKIQQHDFSMMWPII 839
              ++++ + YRY + + +   L+          Q  +P + +    I Q   +  WPI 
Sbjct: 666 --ADRLVQLNYRYTSPEYIQQTLS----------QITNPGYQQG---ISQVGATASWPIA 710

Query: 840 PQWNLITRWQYDYARNRTLEAFGGFEYDNCCWKLRV-INRYWVSNDEYSQIAPLNEKGDH 898
             W ++  W YD    +  + F G +Y++CC+ +R+   R   S D     A      D+
Sbjct: 711 DSWAVVGAWYYDIKAKQPADQFLGLQYNSCCYAIRMGYERKITSWDS----ANSKSNYDN 766

Query: 899 GLFFQIVLKGLGGLTGAKVESFLDKGIEGYR 929
            + F I L+GL           L +GI  Y+
Sbjct: 767 KISFNIELRGLSPSYSLGTGEMLRQGILPYQ 797