Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 685 a.a., Exoribonuclease II (EC 3.1.13.1) from Variovorax sp. SCN45

 Score = 49.3 bits (116), Expect = 8e-10
 Identities = 83/352 (23%), Positives = 131/352 (37%), Gaps = 83/352 (23%)

Query: 274 TIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIGSALDNEAQVRGNSV 333
           +ID     + DDA+  +       L SG   + + IA  +  +  GSA+DN A+ R ++V
Sbjct: 246 SIDDSQTTEIDDALSVQG------LGSGTVTVGIHIAAPALALTPGSAIDNVARARMSTV 299

Query: 334 YFPERVIPMLPEQLSNGLCSL----NPKVDRLAMVCEMTISKTGEMTDYQFYEAVIHSQA 389
           Y P   I MLP+ + N    L     P V   A   E T+   G  T  +    V    A
Sbjct: 300 YMPGYKITMLPDDVVNTYTLLEGGDRPAVSLYARFDEATLELQGTETKLERVPIV----A 355

Query: 390 RLTYNKVSTILETP----------KTSEAKA-LRSEYAGVVPHLKQLYSLYKVLLGARHT 438
            L ++++ T +  P           T EA A LR+  + +    KQL +  +V+ G    
Sbjct: 356 NLRHDQLDTFVTQPWLEDASFQSEGTPEAAAQLRAPLSFLFRLAKQLKAQREVVRGKPEN 415

Query: 439 RGAIDFETQ----ETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEI 494
               D+  +    E     G+E ++   T         ++ E M+ AN +   +L +  +
Sbjct: 416 FNRPDYNFRLVGNEGNEPTGNE-QVQISTRQRGAPLDLIVSEAMILANSSWGGWLGELGV 474

Query: 495 PALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTV 554
           P LYR      P             G+ +  G                            
Sbjct: 475 PGLYRSQASLAP-------------GIKVRMG---------------------------- 493

Query: 555 MLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTH-RAIRSVIHSK 605
             R+L           H GL  ++Y   TSP+RRY DL+   + I +  H K
Sbjct: 494 -TRALP----------HAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGK 534