Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score = 1401 bits (3627), Expect = 0.0
 Identities = 694/866 (80%), Positives = 766/866 (88%), Gaps = 14/866 (1%)

Query: 1   MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR 60
           MADWQSLDPEAAREAEKY+NPIPSRELIL  LADRG PA+RE+L +EFGL  EDQ+EALR
Sbjct: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60

Query: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR 120
           RRLRAMERD QLIYTRRGTYAPVDKLDLI GR++GHRDGFGFLIPDDGS+DLF+SP+QMR
Sbjct: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR 120

Query: 121 LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV 180
           LVFDGDR LARVSG+DRRGRREGV+VEV+SRAHES+VGRYFEEGGIG+V PDNPK+QQEV
Sbjct: 121 LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV 180

Query: 181 LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV 240
           L+T GRNG AK+GQFVE+KITHWPT RFQPQGD+VEV+GNYMAPGMEIDVALR+YDIPHV
Sbjct: 181 LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV 240

Query: 241 WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300
           WP  V+KEA K + EVEEKDKEKR+DLRHLPFVTIDGEDARDFDDAVYCE   GKLRLFS
Sbjct: 241 WPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPL-GKLRLFS 299

Query: 301 GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR 360
           GGW+L+VAIADVSSYV++GSALD EAQ RGNSVYFPERV+PMLPE+LSNGLCSLNP VDR
Sbjct: 300 GGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR 359

Query: 361 LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVP 420
           LAMVCEMT++K G+M DYQFYE VIHS ARLTYNKVS++LE  +T E KALR EY  VVP
Sbjct: 360 LAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVP 419

Query: 421 HLKQLYSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA 480
            LK LY+LYKVL+ ARHTRGAIDFETQETRI+FG ERKIA I PT RNDAHKLIEECMLA
Sbjct: 420 DLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLA 479

Query: 481 ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA 540
           ANVATAEFL+KH +PALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD P+PKDYQALLA
Sbjct: 480 ANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD-PSPKDYQALLA 538

Query: 541 SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS 600
           SI  RPD+H+IQTVMLRSLSQAVYS +N GHFGLNYEAYTHFTSPIRRYPDLL HRAIRS
Sbjct: 539 SIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRS 598

Query: 601 VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE 660
           +I SK +TPHVKRAGAM+IPKARIYPYDE  LEQLGEQCSM+ERRADEATRDVVNWLKCE
Sbjct: 599 IIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCE 658

Query: 661 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG 720
           FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHV+ALPGDYYHFDPVHHRLAGERTG
Sbjct: 659 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTG 718

Query: 721 RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEP-ASKGKAAPAKATAA 779
           RSFRLGDT+EV+VMRVDLDERKIDF +S+K   +P  RK+RG+ P A K +  PA    A
Sbjct: 719 RSFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKA 778

Query: 780 EPAPAKAGRRSSTKEKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSR 839
            P P       S K +A EAY P DA  +NAE+RKSRE+K+ L+ +A+S    ++G KS 
Sbjct: 779 TPKP------RSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARS----SAGSKSE 828

Query: 840 GAENPSSKPSKHRKGPPKAGSAPAKS 865
               PS KP+KHRKGPPK+G AP K+
Sbjct: 829 KGGKPSGKPTKHRKGPPKSG-APRKN 853