Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 644 a.a., exoribonuclease II (NCBI) from Escherichia coli BW25113

 Score =  191 bits (486), Expect = 9e-53
 Identities = 180/672 (26%), Positives = 286/672 (42%), Gaps = 76/672 (11%)

Query: 91  GRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRRGRREGVIVEVVS 150
           G +     GFGFL   D     F+ P QM+ V  GDR +A +     + R      E+V 
Sbjct: 24  GVVKATEKGFGFL-EVDAQKSYFIPPPQMKKVMHGDRIIAVIH--SEKERESAEPEELVE 80

Query: 151 RAHESIVGRYFEEGGIGFVVPDNPKVQQEV--LITPGRNGAAKVGQFVEVKITHWP---- 204
                 VG+   +     +VPD+P ++  +      G N   K G +   ++   P    
Sbjct: 81  PFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGD 140

Query: 205 TARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEKR 264
            + +      +    ++  P     V L  +++    P+ V  E           +   R
Sbjct: 141 RSFYAELTQYITFGDDHFVPWW---VTLARHNLEKEAPDGVATEM--------LDEGLVR 189

Query: 265 IDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIGSALDN 324
            DL  L FVTID     D DDA++ +A P          +L VAIAD ++++  GS LD 
Sbjct: 190 EDLTALDFVTIDSASTEDMDDALFAKALP------DDKLQLIVAIADPTAWIAEGSKLDK 243

Query: 325 EAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKTGEMTD-YQFYEA 383
            A++R  + Y P   IPMLP +LS+ LCSL     R  + C MT+S  G + D  +F+ A
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAA 303

Query: 384 VIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSLYKVLLGARHTRGAID 443
            I S+A+L Y++VS  LE          + E   +   ++ L  + +     RH    + 
Sbjct: 304 TIESKAKLVYDQVSDWLE-----NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVF 358

Query: 444 FETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHDG 503
            +  + R + G + ++  I    R  A++++EE M+AAN+  A  L+      +Y VH G
Sbjct: 359 KDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMG 418

Query: 504 PPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTVMLRSLSQAV 563
             P   + L A L   G  LH   +     D    L    D      + + + R  S A 
Sbjct: 419 FDPANADALAALLKTHG--LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAE 476

Query: 564 YSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTPHVKRAGAMTIPKAR 623
            S +   HFGL  EAY  +TSPIR+Y D++ HR +++VI  +  T               
Sbjct: 477 ISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT--------------- 521

Query: 624 IYPYDEAALEQLGEQCSMSERRA--DEATRDVVNWLKCEFMKDRVG--ETFPGVITAVTG 679
             P DE  ++       M+ERR     A RDV +WL   F+KD+ G    F   I  ++ 
Sbjct: 522 -RPQDEITVQ-------MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573

Query: 680 FGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRS--------FRLGDTVEV 731
            G+ V L D        +  +P  + H   V   L   +   +        +++ D ++V
Sbjct: 574 GGMRVRLVDNGA-----IAFIPAPFLH--AVRDELVCSQENGTVQIKGETVYKVTDVIDV 626

Query: 732 QVMRVDLDERKI 743
            +  V ++ R I
Sbjct: 627 TIAEVRMETRSI 638