Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 643 a.a., exoribonuclease II from Dickeya dianthicola ME23

 Score =  195 bits (495), Expect = 8e-54
 Identities = 188/666 (28%), Positives = 289/666 (43%), Gaps = 81/666 (12%)

Query: 99  GFGFLIPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRR--GRREGVIVEVVSRAHESI 156
           GFGFL   D     F+ P QM+ V  GDR +A +     R     E ++   ++R     
Sbjct: 32  GFGFL-EADAQKSYFIPPPQMKKVMHGDRIIAALHTEKEREIAEPETLVEPFLTR----F 86

Query: 157 VGRYFEEGGIGFVVPDNPKVQQEVLITPGRNGAAKVGQFVEVKITHWPTARFQPQ----- 211
           VGR  ++     +VPD+P ++  +   P R      G   + K   W  A  +       
Sbjct: 87  VGRVQKKDDRLSIVPDHPLLKDAIPCRPAR------GVEQDFKAGDWAVAEMRRHPLKGD 140

Query: 212 ----GDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEKRIDL 267
                D+   +     P     V L  +++  + P+A   +A +L     E++     DL
Sbjct: 141 RGFFADLTHYITTGDDPLAPWWVTLSRHNLERIAPDA---DAAELNDGQLERE-----DL 192

Query: 268 RHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIGSALDNEAQ 327
             L FVTID     D DDA+Y +          G   + VAIAD ++YV+  S LD  A+
Sbjct: 193 TGLDFVTIDSASTEDMDDALYVQDNG------DGTLDMTVAIADPTAYVRADSELDAIAR 246

Query: 328 VRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKTGEMTDYQFYEAVIHS 387
            R  + Y P   IPMLP  LS+ +CSL P   R  + C MTI+  G ++  +F+ A I S
Sbjct: 247 QRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTIAADGALSQIRFFAAWIES 306

Query: 388 QARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSLYKVLLGARHTRGAIDFETQ 447
           +A+L Y+ VS  LE     +    + E   +   ++ L+ +       R T   +  +  
Sbjct: 307 RAKLVYDDVSNWLE-----QQGDWQPESDNIADQIRLLHRVCLARNAWRTTHALVFRDRP 361

Query: 448 ETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHDGPPPE 507
           + R + G   ++  I    R  A++++EE M+AANV  A+ L+      +Y VH+G  P 
Sbjct: 362 DYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDALGFGVYNVHNGFDPV 421

Query: 508 RLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTVMLRSLSQAVYSAD 567
            +++  A L   G+     +      D   +L    D      + + + R  + A  S  
Sbjct: 422 SIDQAVAVLESNGIQADAQQ--LLTLDGFCVLRRELDAQPTQFLDSRIRRFQTFAEISTA 479

Query: 568 NQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTPHVKRAGAMTIPKARIYPY 627
              HFGL  EAY  +TSPIR+Y D++ HR +++VI    +TP  K             P 
Sbjct: 480 PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVI---THTPAEK-------------PQ 523

Query: 628 DEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVG--ETFPGVITAVTGFGLFVE 685
           DE  L QL E+  ++      A RDV +WL   F+KD+ G    F G I  V   GL V 
Sbjct: 524 DEVTL-QLAERRRLNRM----AERDVSDWLYARFLKDKAGTDARFTGEIMDVNRGGLRVR 578

Query: 686 LTDIYVEGLVHVTALPGDYYHFDPVHHRL-AGERTG-------RSFRLGDTVEVQVMRVD 737
           L +      +     P  + H   V   L   + TG         +R  DT+ V +  V 
Sbjct: 579 LLENGATAFI-----PASFIH--AVRDELVCSQDTGIVTVKGEPVYRQSDTLTVMLTEVR 631

Query: 738 LDERKI 743
           L+ R I
Sbjct: 632 LETRNI 637