Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 813 a.a., exoribonuclease R, RNase R from Escherichia coli BL21

 Score =  806 bits (2082), Expect = 0.0
 Identities = 428/832 (51%), Positives = 557/832 (66%), Gaps = 37/832 (4%)

Query: 6   SLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRA 65
           S DP   REAEKY NPIPSRE IL HL  R  PASR++L  E  +  E+QLE LRRRLRA
Sbjct: 2   SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61

Query: 66  MERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDG 125
           MERD QL++TRR  YA  ++LDL+ G + GHRDG+GFL  +   DDL++S  QM+    G
Sbjct: 62  MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121

Query: 126 DRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPG 185
           D+ LA+  G DR+GRRE  IV V+      IVGRYF E G+GFVVPD+ ++  ++LI P 
Sbjct: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181

Query: 186 RNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAV 245
           +   A++G  V V++T  PT R +  G IVEV+G+ M  GM +D+ALRT++IP++WP+AV
Sbjct: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241

Query: 246 LKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKL 305
            ++   LK EV E+ K  R+DLR LP VTIDGEDARDFDDAVYCE K G      GGW+L
Sbjct: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG------GGWRL 295

Query: 306 FVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVC 365
           +VAIADVS YV+  + LD EA+ RG SVYFP +VIPMLPE LSNGLCSLNP+VDRL MVC
Sbjct: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355

Query: 366 EMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQL 425
           EMT+S  G +T Y+FYEAV+ S ARLTY KV  IL+  +      LR +YA +V HL++L
Sbjct: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-----LREQYAPLVKHLEEL 410

Query: 426 YSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVAT 485
           ++LYKVL  AR  RG I FE++E + +F +ER+I  I  T RNDAHKLIEECM+ AN++ 
Sbjct: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470

Query: 486 AEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDR 545
           A F++K + PAL+R+HD P  E +   R+ L ELGL L  G + P P+DY  LL S+ DR
Sbjct: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL-PGGNKPEPRDYAELLESVADR 529

Query: 546 PDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSK 605
           PD  ++QT++LRS+ QA+Y  +N+GHFGL  ++Y HFTSPIRRYPDL  HRAI+ ++  +
Sbjct: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589

Query: 606 QNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDR 665
           Q        G  T  +   Y Y    + QLG+ CSM+ERRADEATRDV +WLKC+FM D+
Sbjct: 590 QG-----HQGNTT--ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642

Query: 666 VGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRL 725
           VG  F GVI++VTGFG FV L D++++GLVHV++L  DYY FD V  RL GE +G+++RL
Sbjct: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702

Query: 726 GDTVEVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEPASKGKAAP--------AKAT 777
           GD VEV+V  V++DERKIDF +      +P +  K   E A KG A           K  
Sbjct: 703 GDRVEVRVEAVNMDERKIDFSLISS-ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKV 761

Query: 778 AAEPAPA---------KAGRRSSTKEKAPEAYRPSDAAAKNAELRKSRELKQ 820
             EP  A         KA ++ + K K P A     AAA  A+    +++ +
Sbjct: 762 NFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813