Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

 Score = 2528 bits (6553), Expect = 0.0
 Identities = 1279/1357 (94%), Positives = 1315/1357 (96%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60
            MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGA+KD FRDVGLHAAFKSV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120
            FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVT+AVPLRVKVRLIIFDKESSNKAIKD
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD 120

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
Sbjct: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240
            IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGY+TE+VL+ FYTTNVF +  E 
Sbjct: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK 240

Query: 241  LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR 300
            L LEL+  RLRGE+AV+DI DE GKVIVE GRRITARHINQ+EKAG+K+L+VP++YVLGR
Sbjct: 241  LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR 300

Query: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360
            TTAK IVHPATGEILAECNTE+ TE+L K+AKAQVVRIETLYTNDIDCGPFISDTLKID+
Sbjct: 301  TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT 360

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420
            TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFS ERYDLSAVGRMKFNRRIGRTEIE
Sbjct: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE 420

Query: 421  GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
            GSGVL KEDIV VLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
Sbjct: 421  GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALGP 540
            KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRV ALGP
Sbjct: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
Sbjct: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600

Query: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660
            + +V+D+IVFLSAIEEADHVIAQASA MNDKK L+DELVAVRHLNEFTVKAPEDVTLMDV
Sbjct: 601  EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV 660

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
Sbjct: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
            VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
Sbjct: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780

Query: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
            +VQR DIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
Sbjct: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
Sbjct: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960
            TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERD+RAL+IEK QLDE
Sbjct: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE 960

Query: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA 1020
            IRKDLNEEFRIVEGATFERLRSAL G   +GGAGLKKG  ITDE+LDGLEHGQWFKLRMA
Sbjct: 961  IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA 1020

Query: 1021 EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
            EDALNEQLEKAQ YIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
Sbjct: 1021 EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
Sbjct: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140

Query: 1141 LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP 1200
            LGEKI+RM+EEQRK A+LR FL E+YNEIGGR E LD F+D+EIL LA NL+ GVPMATP
Sbjct: 1141 LGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPMATP 1200

Query: 1201 VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA 1260
            VFDGAKE EIKAMLKLADLPESGQM LFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
Sbjct: 1201 VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA 1260

Query: 1261 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1320
            RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
Sbjct: 1261 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1320

Query: 1321 KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
Sbjct: 1321 KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357