Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta RpoB from Escherichia coli ECRC62

 Score = 1961 bits (5081), Expect = 0.0
 Identities = 976/1360 (71%), Positives = 1160/1360 (85%), Gaps = 21/1360 (1%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60
            M YSYTEKKRIRKDF K P V+DVPYLL+IQLDS+++F++    +D     GL AAF+SV
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE----QDPEGQYGLEAAFRSV 56

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI SYSGN+ L+YV YRLGEP FDV+EC +RGVTY+ PLRVK+RL+I+++E+    +KD
Sbjct: 57   FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 117  IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240
            IPYRGSWLDFEFDPKD +FVRIDRRRKLPA+++LRAL YTTEQ+LD F+   +F ++D  
Sbjct: 177  IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236

Query: 241  LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR 300
            L++EL+  RLRGE A  DI+   GKV VE GRRITARHI Q+EK  +K +EVP++Y+ G+
Sbjct: 237  LQMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295

Query: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360
              AK  +  +TGE++   N EL+ ++LAK++++   RIETL+TND+D GP+IS+TL++D 
Sbjct: 296  VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420
            T+++L ALVEIYRMMRPGEPPT++AAE+LF NLFFS +RYDLSAVGRMKFNR + R EIE
Sbjct: 356  TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415

Query: 421  GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
            GSG+L K+DI+ V+K L+DIRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 416  GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALGP 540
            KERLS+ + + LMPQD+INAKP++AAVKEFFGSSQLSQFMDQNNPLSEITHKRR+ ALGP
Sbjct: 476  KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V 
Sbjct: 536  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595

Query: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660
            D +VTDEI +LSAIEE ++VIAQA++ ++++   V++LV  R   E ++ + + V  MDV
Sbjct: 596  DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            S +QVVSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRADKPLVGTGMER VA DSGV 
Sbjct: 656  STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
             VA+RGGV+  VDASRIV++V +DE+  GEAG+DIYNLTKYTRSNQNTCINQ P VS G+
Sbjct: 716  AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775

Query: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             V+R D++ADGPSTD+GELALGQNMR+AFM WNG+NFEDSI +SERVVQEDRFTTIHIQE
Sbjct: 776  PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            L CV+RDTKLGPEEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 836  LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960
            TPEEKLLRAIFGEKASDVKD+SLRVP G  GTVIDVQVFTRDGVE+D RAL IE+ QL +
Sbjct: 896  TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955

Query: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA 1020
             +KDL+EE +I+E   F R+R+ LV     GG   +K        LD L   +W +L + 
Sbjct: 956  AKKDLSEELQILEAGLFSRIRAVLVA----GGVEAEK--------LDKLPRDRWLELGLT 1003

Query: 1021 EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
            ++    QLE+      + +   + K E K+RK+ QGDDLAPGVLKIVKVYLA++RRIQPG
Sbjct: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGV+S I P+EDMP+D NGTPVD+VLNPLGVPSRMN+GQILETHLG+AAKG
Sbjct: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123

Query: 1141 LGEKINRMIEEQRKVADLRKFLHEIYNEIGG---RNEELDTFSDQEILDLAKNLRGGVPM 1197
            +G+KIN M+++Q++VA LR+F+   Y ++G    +  +L TFSD+E++ LA+NLR G+P+
Sbjct: 1124 IGDKINAMLKQQQEVAKLREFIQRAY-DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182

Query: 1198 ATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDK 1257
            ATPVFDGAKE+EIK +LKL DLP SGQ++L+DGRTG +FERPVTVGYMYMLKLNHLVDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242

Query: 1258 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1317
            MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302

Query: 1318 KMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            KMYKNIVDG+H+MEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342