Pairwise Alignments

Query, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas simiae WCS417

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score = 2650 bits (6870), Expect = 0.0
 Identities = 1351/1399 (96%), Positives = 1376/1399 (98%)

Query: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
Sbjct: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180
            PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
Sbjct: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180

Query: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240
            GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420
            LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540
            RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 541  EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA 600
            EAALHAK+KVRINETV +RDG  V NTRIVDTTVGRALL+QVVP GL YDVVN PMKKKA
Sbjct: 541  EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA 600

Query: 601  ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE 660
            ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIG ATDE
Sbjct: 601  ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE 660

Query: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN 720
            VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDR G EV+QESFN
Sbjct: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN 720

Query: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR 780
            SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
Sbjct: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGT+ GL+MTPHIEGGDVVEPLGERVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL 840

Query: 841  GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG 900
            GRVIARDVFKPGTE+VIVPAGTLVDE+WVEFIELNSIDEVIVRSPI+CETRYGICAKCYG
Sbjct: 841  GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG 900

Query: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL 960
            RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGG VRL
Sbjct: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL 960

Query: 961  HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW 1020
            HNLK VER DG+LVAVSRSGELAIAD++GRERERYKLPYGAVISVKEG+KV+AGAIVAKW
Sbjct: 961  HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW 1020

Query: 1021 DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM 1080
            DPHTHPIVTE+KGTVT+VGMEE ITIKRQTDELTG+TNIEVLD KDRPAAGK+IRPA+KM
Sbjct: 1021 DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM 1080

Query: 1081 VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR 1140
            VD  GKDL LPGTDV AQYFLPANALVGVADGA+I +GDVIARIPQETSKTRDITGGLPR
Sbjct: 1081 VDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR 1140

Query: 1141 VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE 1200
            VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITP DGS+PYEELIPKWRHLNVFE
Sbjct: 1141 VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE 1200

Query: 1201 GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260
            GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
Sbjct: 1201 GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260

Query: 1261 LRKVEIAESGDSSFIKGDQMELTHVLVENERLAAEDKFVSKFTRVLLGITKASLSTESFI 1320
            LRKVEI+ESGDSSFIKGDQMELT VLVENERLA+EDKF+SKFTRVLLGITKASLSTESFI
Sbjct: 1261 LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI 1320

Query: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR 1380
            SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
Sbjct: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR 1380

Query: 1381 VSASEVEAALTEALNSSGN 1399
            VSASEVEAALTEALNSSGN
Sbjct: 1381 VSASEVEAALTEALNSSGN 1399