Pairwise Alignments

Query, 333 a.a., DNA-directed RNA polymerase subunit alpha from Pseudomonas simiae WCS417

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha from Dickeya dianthicola ME23

 Score =  469 bits (1206), Expect = e-137
 Identities = 241/326 (73%), Positives = 276/326 (84%), Gaps = 1/326 (0%)

Query: 1   MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE 60
           MQ SV EFL PR +D++ VS T AK+TLEPLERGFGHTLGNALRRILLSSMPGCAV E E
Sbjct: 1   MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60

Query: 61  IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD 120
           IDGVLHEYS  EGVQED++EILLNLKGLA+++ G+DEV LTL+K G G VTAADI  D D
Sbjct: 61  IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120

Query: 121 VEIVNPDHVIANLAS-NGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPV 179
           VEIV P HVI +L   N ++NM++ V RGRGY PA +R   E++ R IGRL +D+ +SPV
Sbjct: 121 VEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSPV 180

Query: 180 RRIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEP 239
            RIAY VE ARVEQRT+LDKLVI++ETNGT+DPEEAIRRAATIL +QL AFVDL+   +P
Sbjct: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240

Query: 240 VVIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSL 299
            V E++ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKSL
Sbjct: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300

Query: 300 TEIKDVLASRGLSLGMRLDNWPPASL 325
           TEIKDVLASRGLSLGMRL+NWPPAS+
Sbjct: 301 TEIKDVLASRGLSLGMRLENWPPASI 326