Pairwise Alignments
Query, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417
Subject, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Score = 531 bits (1369), Expect = e-154
Identities = 372/1024 (36%), Positives = 527/1024 (51%), Gaps = 119/1024 (11%)
Query: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I IRGAR HNL+N+DL + ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
Query: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDH 123
FL M+KP VD +EG+ PAI+I+Q + + RSTVGT+TE+ D+L+LL+AR +
Sbjct: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDRET 125
Query: 124 DIPLEAQTVSQMVDLVLAQPEGA---KLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180
+P+ + + + + A +L++ PV V + L A GF R +
Sbjct: 126 ALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFTRVQ-- 183
Query: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADG---IALVAPM 237
E + A +K +DVV DRF+ + + R+ E+ E ALK G +
Sbjct: 184 ---SEREVATPTGPRK--VLDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVHATGAE 238
Query: 238 DDEPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-N 296
++ P + FS CP ++ P +FSFN+ GAC TC G G D+ ++ N
Sbjct: 239 ENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPN 298
Query: 297 GDMTLAEGAIRGWDRRNVYYFQMLGSLASHYK---FSLEVPFNQLPADQQKVILHGSGSQ 353
+TL GAI+ + + + L H + + P+N+L +Q+ ++ G+ +
Sbjct: 299 DKLTLRAGAIK--TIQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVIEGTPNY 356
Query: 354 NVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRL 413
G+ K+ + LE + +R L+K+ S CP C G RL
Sbjct: 357 K--------EGNWNKQWYGVRRFFAYLESK---AYKMHIRVLLSKYRSYTQCPTCSGARL 405
Query: 414 RREARHVWVGEK------TLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQ 467
+ ++ +G K P +P G + L G + D +L I +
Sbjct: 406 KLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLC--LHDLMLLPIERLRK 463
Query: 468 FLVNVG-------------------------LDYLSLDRSADTLSGGEAQRIRLA-SQIG 501
F +G + +L + + GEAQ ++L +I
Sbjct: 464 FFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEIT 523
Query: 502 AGL-----VGVLYI-LDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVE------HDEDA 549
L VG+ Y+ LD S L + R+ T + NT+ V++ H D
Sbjct: 524 TRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDM 583
Query: 550 IRL--------------------------ADYVVDIGPGAGVHGGHIVAEGTPAEVMAHP 583
R+ AD V+D+GPG G GG IV +GT + +
Sbjct: 584 NRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGT-TDQLRDA 642
Query: 584 DSLTGKYLSGRVKIEVPAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGS 643
D+LTG+YL GR KI + KR L L+G R +NL+N+ ++ P+ L CVTGVSGS
Sbjct: 643 DTLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGS 702
Query: 644 GKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATY 703
GKSTLI + L P G T AHD + G +HL VV +DQSPIG+T RSNPA+Y
Sbjct: 703 GKSTLIQDVLAPALMRHF-GKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASY 761
Query: 704 TGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCD 763
G + IRE+FA SR RGY +FSFN GRC C G G VEM FL D+Y+ C
Sbjct: 762 VGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCP 821
Query: 764 VCKSKRYNRETLEIKY--KGKS--IHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSY 819
C KRY E LE++ KGKS + + L++T+ EA F+A + R LQ + DVGL Y
Sbjct: 822 DCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDY 881
Query: 820 IKLGQSATTLSGGEAQRVKLSRELSKRDTGK-----------TLYILDEPTTGLHFADIQ 868
+KLGQ TLSGGEAQR+KL+ L++ G TL++ DEPTTGLHF DI
Sbjct: 882 VKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIA 941
Query: 869 QLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQ 928
+L+ L +L + G++++VIEHNLDVI+ +DWL+DLGPEGG GGQ++A GTPEQ+ E
Sbjct: 942 RLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRA 1001
Query: 929 SHTG 932
S TG
Sbjct: 1002 SLTG 1005
Score = 510 bits (1314), Expect = e-148
Identities = 276/580 (47%), Positives = 372/580 (64%), Gaps = 41/580 (7%)
Query: 400 LSTQPCPDCRGTRLRREARHVWVGEKT--------LPAVTNLPIGDACEYFGVLKLTGRR 451
L+ CP C GTRL AR V G + + + + + ++F L LTGR
Sbjct: 1371 LADVACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGRE 1430
Query: 452 GEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVGVLYIL 511
EIA ++ EI+ RL+FL VGL YL+LDR A TLSGGEAQRIRLA+Q+G+ L GV Y+L
Sbjct: 1431 AEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVL 1490
Query: 512 DEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIV 571
DEP+IGLH RDN LL L L + GNT++VVEHDED IR AD+++DIGP AG GG +V
Sbjct: 1491 DEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLV 1550
Query: 572 AEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRT---------PRNKKLALHLKGARGNNL 622
AEGT A++ DS TG+YL ++ + A+R+ + L +H GA +NL
Sbjct: 1551 AEGTVADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEWLTVH--GADLHNL 1608
Query: 623 RNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAAHDS-------- 674
+++ +P+ L VTGVSGSGKSTL + L + T D+
Sbjct: 1609 QDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRDADAAGKRPAWA 1668
Query: 675 ----IKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGYGPGRF 730
+ G E +D+V+++DQ+PIG+TPRS PATY G + IR+LFA E+++RGYGP RF
Sbjct: 1669 GCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARF 1728
Query: 731 SFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEM 790
SFN GRC C+G G+ +EM FLPD+ VPC+VC R+N ETL + ++GKSI + L+M
Sbjct: 1729 SFNTGEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKM 1788
Query: 791 TIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSK----- 845
++EA FF ++P +A LQ L DVGL Y+ LGQ + TLSGGEAQR+KL ELSK
Sbjct: 1789 EVDEAVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDI 1848
Query: 846 ----RDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLV 901
+ TLY+LDEPT GLH AD+++L+ VLHRL + G++VVVIEH+LD+I ADW++
Sbjct: 1849 TRRGQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWII 1908
Query: 902 DLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLLER 941
DLGPEGG+ GG+I+A PE+V + +HTG L P+L R
Sbjct: 1909 DLGPEGGNAGGRIVAAAPPEEVVRL-GTHTGVALAPVLAR 1947
Score = 216 bits (549), Expect = 2e-59
Identities = 115/306 (37%), Positives = 176/306 (57%), Gaps = 13/306 (4%)
Query: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
D + I AR HNLKN+ + +PR K V+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 1041 DAVQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYA 1100
Query: 62 RQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCP 121
R + +P+VD + G+ P ++IEQ+ + +STVGT TE++ +LRLLY ++GI C
Sbjct: 1101 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCI 1160
Query: 122 DHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARING 181
++ QT + ++ +G + LLAP++ RKG + + + R +GF R++G
Sbjct: 1161 HDGAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDG 1220
Query: 182 KLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDD-- 239
P++D+ K+HSI++ V V + L E+ AL+ G+ V D
Sbjct: 1221 DFLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKALEHGKGVVHVLSELDGL 1280
Query: 240 -----------EPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQF 288
G +FS ACP+C + +EL+P+LFS+N+ G CP C G GVK
Sbjct: 1281 RAAMMAGVSAAGIGRVHVFSTLRACPVCSTSYAELDPRLFSYNSKHGWCPDCVGTGVKLS 1340
Query: 289 FDIKRL 294
D +++
Sbjct: 1341 KDQRKV 1346
Score = 155 bits (391), Expect = 3e-41
Identities = 104/276 (37%), Positives = 148/276 (53%), Gaps = 36/276 (13%)
Query: 405 CPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRE 464
CPDC G R R E V V K G + VL LT + +++
Sbjct: 820 CPDCDGKRYRPEILEVRVERK----------GKSYNVADVLDLTVAEAAAVFEADRDVLR 869
Query: 465 RLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLA------------SQIGAGLVGVLYILD 512
LQ + +VGLDY+ L + TLSGGEAQR++LA S+ G L++ D
Sbjct: 870 VLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFD 929
Query: 513 EPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVA 572
EP+ GLH D RL+ L+ L + G+++IV+EH+ D IR +D+++D+GP G GG +VA
Sbjct: 930 EPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVA 989
Query: 573 EGTPAEVMAHPDSLTGKYLS--------GRVKI-EVPAKRTPRNKKL-----ALHLKGAR 618
EGTP ++ + SLTG L+ K+ E A+R N K A+ + AR
Sbjct: 990 EGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDAVQIVNAR 1049
Query: 619 GNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLF 654
+NL+N+ ++IP G + VTGVSGSGKSTL + LF
Sbjct: 1050 EHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILF 1085
Score = 67.4 bits (163), Expect = 9e-15
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ + GA HNL+++ TLP +L+V+TG+SGSGKS+LA D L A Q V+ ++ R
Sbjct: 1598 LTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRD 1657
Query: 64 FLSMMEKP------DVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYA 113
+ ++P VD E + + ++Q PRS T +D +R L+A
Sbjct: 1658 ADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
Score = 61.2 bits (147), Expect = 6e-13
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 12/114 (10%)
Query: 611 ALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLF---------PLSATAL 661
++ ++GAR +NL+N+DL+I G +T VTG SGSGKS+L+ +TL+ SA A
Sbjct: 5 SIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
Query: 662 NGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFA 715
++ A D ++G + + IDQ+ R+ RS T T L ++ LFA
Sbjct: 65 QFLDRMDKPAVDKVEG---VPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFA 115
Score = 54.7 bits (130), Expect = 6e-11
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 3 KILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
++++ G R HNLKNI + P +L+ +TG+SGSGKS+L D L A R
Sbjct: 670 RLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVL-----------APALMR 718
Query: 63 QFLSMMEKPDV-DTIEG---LSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIP 118
F E P D + G L + ++Q RS + +D +R ++A +
Sbjct: 719 HFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFATAALS 778
Query: 119 R 119
R
Sbjct: 779 R 779
Score = 31.6 bits (70), Expect = 5e-04
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 265 PKLFSFNNPAGACPTCDGLGVK 286
P FSFN G CP C+G GV+
Sbjct: 1725 PARFSFNTGEGRCPGCEGAGVR 1746