Pairwise Alignments

Query, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

 Score =  492 bits (1267), Expect = e-143
 Identities = 275/706 (38%), Positives = 405/706 (57%), Gaps = 39/706 (5%)

Query: 268 FSFNNPAGACPTCDGLG-VKQFFDIKRLVNGDMTLAEGAIRGWDRRNVYYFQMLGSLASH 326
           FS N P GACP C GLG V +  +   + +  +T+ E A+  W     +  Q L  +   
Sbjct: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 195

Query: 327 YKFSLEVPFNQLPADQQKVILHGSGSQNVD----FKYLNDRGDIVKRSHP-----FEGIV 377
             + +++P+  LP  Q+  IL    +              R  + ++  P     F G  
Sbjct: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255

Query: 378 PNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGD 437
             +   +  ++SA +R+ +A+++    CP C+G RL+REA  V      +  +++L +  
Sbjct: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315

Query: 438 ACEYFGVLK----LTGRRGEI-------ADKILKEIRERLQFLVNVGLDYLSLDRSADTL 486
             E F  +     LT ++ E+       A +I KE+ ER+  L+++GL YL+L+RS  TL
Sbjct: 316 LAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTL 375

Query: 487 SGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHD 546
           S GE QR+RLA+Q+ + L GV+Y+LDEPS GLH  D++ L   L+ L+  GN+V VVEHD
Sbjct: 376 SSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHD 435

Query: 547 EDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPR 606
            D +R AD++VD+GP AG HGG I+  G PA +     S T  YL       V A R PR
Sbjct: 436 LDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL---FDAPVQATRAPR 492

Query: 607 NKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATT 666
             +  L L+G   NNL N+    P+G  T VTG+SGSGKS+L++  L  L    L  A  
Sbjct: 493 QARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQ 552

Query: 667 LEAAAHDSIK-------------GLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIREL 713
                  S++             GL  + ++V +DQ PIGRTPRSN ATYTGLF  +R+ 
Sbjct: 553 RSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKC 612

Query: 714 FAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRE 773
           FA   +++++G+  GRFSFNV  GRC  C+G+G + VE+ F+P +Y PC  C+  RYN E
Sbjct: 613 FAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPE 672

Query: 774 TLEIKYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGE 833
           TL + ++G +I + L++T+++A   F   P   R LQ L D+GL Y++LGQ AT LSGGE
Sbjct: 673 TLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGE 732

Query: 834 AQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDV 893
           AQR+KL+ EL +   G TLY+LDEPT GLH  DI +LL  L+RL + G++VVV+EH++ V
Sbjct: 733 AQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRV 792

Query: 894 IKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939
           +  +DW++D+GP  G  GG+++  GTP+ V+    S T  +L   L
Sbjct: 793 VAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838



 Score =  135 bits (341), Expect = 8e-36
 Identities = 63/113 (55%), Positives = 88/113 (77%)

Query: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLKNID+ +PRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71

Query: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG 116
            +  +  PDVD I+GL PA++++Q+  + + RS+VG++T +   +R+LY+R G
Sbjct: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124



 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 23/173 (13%)

Query: 600 PAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFP---- 655
           P+  TP      + ++GAR +NL+N+D++IP   L   TGVSGSGKS+L  +TL+     
Sbjct: 3   PSPTTPSG---FIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQR 59

Query: 656 --LSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIREL 713
               + A      ++      +  ++ L   V + Q     + RS+  + T L + IR L
Sbjct: 60  RYFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRML 119

Query: 714 FAGVPESRSRGYGPGR-------FSFNVKGGRCEACQGDGLI--KVEMHFLPD 757
           +     SR+  Y PG+       FS N   G C  C G G +    E   +PD
Sbjct: 120 Y-----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 2   DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D + + G   +NL N+    P      +TG+SGSGKSSL    L          +     
Sbjct: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555

Query: 62  RQFLSMMEKPDVDT-------IEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYA 113
            +  S+ ++P+  +       +  +   + ++QK     PRS + T T ++D++R  +A
Sbjct: 556 PEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614