Pairwise Alignments

Query, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score = 1182 bits (3058), Expect = 0.0
 Identities = 600/943 (63%), Positives = 740/943 (78%), Gaps = 11/943 (1%)

Query: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLKNID+ LPRDKL+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDH 123
           FL +M+KPDV++IEGLSPAISIEQK+TS NPRSTVGT+TEIYDY+RLL+ARVG+P  P  
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 124 DIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARINGKL 183
            +P+E+QTVSQMVD V    EG +L LLAP +R RKGE+     EL+ +GF R +++G L
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQKKGFQRVKVDGTL 184

Query: 184 YELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEPGE 243
           YE+DE P+LDK+KKH I+VVVDR  V+  L  RLA+S ETAL LADG+A+    + E GE
Sbjct: 185 YEIDEVPQLDKKKKHDIEVVVDRLVVKPGLGNRLADSIETALSLADGLAIAE--NAETGE 242

Query: 244 EIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGDMTLA 302
             +FSA+FACP+ G  I E+EP+LFSFNNP GACP CDGLGVK +FD + ++ N  ++L 
Sbjct: 243 RTVFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLR 302

Query: 303 EGAIRGW-DRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVDFKYLN 361
           EGAI  W    + YY Q L  LA HY+F L+ P+ +LP   ++VILHGSG++ +   Y +
Sbjct: 303 EGAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNEEIRIAYED 362

Query: 362 D-RGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHV 420
             RG   ++S  FEG++PN+ RRYRET+S+ +RE+L++F  T PC  C G RL+ EA  V
Sbjct: 363 GFRGYHTEKS--FEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAV 420

Query: 421 WVGEKTLPAVTNLPIGDACEYFGVLK--LTGRRGEIADKILKEIRERLQFLVNVGLDYLS 478
            V    +   T   I +A ++F  L   L  +  EIA +IL+EI +RL FLV+VGL+YL+
Sbjct: 421 KVRGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLT 480

Query: 479 LDRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 538
           + R + +LSGGE+QRIRLASQIG+GL GVLY+LDEPSIGLHQRDNDRLL TL+ LRDIGN
Sbjct: 481 MGRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGN 540

Query: 539 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIE 598
           TVIVVEHDEDAIR ADY+VD+GPGAG+HGG +V+EGTPA+VMA P+S+TG+YL+G+  I 
Sbjct: 541 TVIVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIP 600

Query: 599 VPAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSA 658
           +PA R P N K  L L GARGNNL+NVD  IP+G LTCVTGVSG GKSTL+  TL+   +
Sbjct: 601 LPALRRPGNGK-RLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALS 659

Query: 659 TALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVP 718
             L GA   + +  D I G+E+LDK++DIDQSPIGRTPRSNPATYTG F+PIR+ F  +P
Sbjct: 660 RRLMGARE-QPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELP 718

Query: 719 ESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIK 778
           ES+ RGY PGRFSFNVKGGRCEACQGDG+IK+EMHFLPD+YV CDVCK KRYNRETLEI 
Sbjct: 719 ESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGKRYNRETLEIT 778

Query: 779 YKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVK 838
           ++GKSI + L+MT+EEA  FF AVPA+  K+ TL  VGL YI LGQ ATTLSGGEAQRVK
Sbjct: 779 FRGKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQATTLSGGEAQRVK 838

Query: 839 LSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L++ELSKR TG+TLYILDEPTTGLHF D+++LL+V+  L D GNTV+VIEHNL+VIKTAD
Sbjct: 839 LAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIEHNLEVIKTAD 898

Query: 899 WLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLLER 941
           W+VDLGPEGG  GG+I+A GTPE V+   +S+TG+YL P+L R
Sbjct: 899 WIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPILGR 941



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 3   KILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           ++ + GAR +NLKN+D  +P   L  +TG+SG GKS+L  +TLY            A +R
Sbjct: 612 RLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALSR 660

Query: 63  QFLSMMEKPD----VDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLR 109
           + +   E+P     +D +E L   I I+Q      PRS   T T  +  +R
Sbjct: 661 RLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIR 711