Pairwise Alignments

Query, 315 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 344 a.a., Inner membrane protein YbhQ from Variovorax sp. SCN45

 Score =  248 bits (632), Expect = 2e-70
 Identities = 127/308 (41%), Positives = 192/308 (62%), Gaps = 3/308 (0%)

Query: 6   RFKRWKKPLTIAFFLVLIVLFTLLARRIDWSEVVQTLGDFKVRTLVIAGALTLCSFLVYA 65
           R +RW  PL   F + ++ L    A +IDW+   Q L  +    L+    L   S ++Y 
Sbjct: 25  RCRRWALPL---FGIAVLGLLLSHAHKIDWAGAWQALQRYSPLLLLSVLGLATASHMLYG 81

Query: 66  SFDLIGRTYIRQNLVWKQILPVGIISYAFNLNLSAWVGGIAMRYRLYSRLGVSTSNIAKI 125
            FDLIG+ +++  L + +   + + SYAFNLNL + VGGIAMR RLY+R G+  + +A+I
Sbjct: 82  CFDLIGKRHLQHRLPYWRTWAIAVTSYAFNLNLGSLVGGIAMRARLYARAGLDDATVAQI 141

Query: 126 LGLSLATNWFGYMAIAGVVFSSGLVTMPPGWKVSTTALQGIGALLVLASLGYLLACQFSK 185
           +GLSLATNW GY  +AG +F++G +  P    V    L+ +G  ++L +L Y+ AC F++
Sbjct: 142 VGLSLATNWLGYGLLAGGLFAAGAIVPPSQAHVGAGTLRLLGVAMILLALAYVAACAFAR 201

Query: 186 KRAWTIRGMEINLPSVRMACLQLMLGALNWSLMAAVIFTLLPAKLDYPLVLGVLLISAIA 245
            R W  RG  + LP+ R+A +QL L   NW+LM A ++ LL  K+ Y   +GVLL ++I 
Sbjct: 202 GREWRFRGRRLQLPAARLAVVQLALSTTNWALMGAAMYLLLGQKVPYATTMGVLLAASIV 261

Query: 246 GVLTHIPAGLGVLEAVFIALLQHEASRGSLLAGLIAYRAIYFIVPLLIALVMYLGVEAKA 305
           GVLT IPAGLGVLEAV++ALL     +G+L+  ++AYRA+Y+++PL   L +YL +E  A
Sbjct: 262 GVLTPIPAGLGVLEAVYLALLSGTVKQGALMGAVLAYRALYYLLPLAGGLALYLFLERYA 321

Query: 306 KALRVKKT 313
            +   ++T
Sbjct: 322 SSHSAEET 329