Pairwise Alignments

Query, 315 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 318 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  294 bits (753), Expect = 2e-84
 Identities = 149/313 (47%), Positives = 216/313 (69%), Gaps = 5/313 (1%)

Query: 6   RFKRWKKPLTIAFFLVLIVLFTLLARRIDWSEVVQTLGDFKVRTLVIAGALTLCSFLVYA 65
           R++  KK LT  FF+ +IVL  + A+++DW EV + + D+    L+ A  L + S+L+Y 
Sbjct: 7   RWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYG 66

Query: 66  SFDLIGRTYIRQNLVWKQILPVGIISYAFNLNLSAWVGGIAMRYRLYSRLGVSTSNIAKI 125
            +DL+ R Y    L  +Q++ V  I YAFNL LS WVGGI MRYRLYSRLG+  S I +I
Sbjct: 67  CYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRI 126

Query: 126 LGLSLATNWFGYMAIAGVVFSSGLVTMPPGWKVSTTALQ--GIGALLVLASLGYLLACQF 183
             LS+ TNW GY+ +AG++F++G+V +P  W V  T L+  GIG L+++A   YL  C F
Sbjct: 127 FSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAV--YLWFCAF 184

Query: 184 SKKRAWTIRGMEINLPSVRMACLQLMLGALNWSLMAAVIFTLLPAKLDYPLVLGVLLISA 243
           +K R  TI+G ++ LPS + A  Q+++ ++NW +M A+I+ LL   ++Y  VLGVLL+S+
Sbjct: 185 AKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSS 244

Query: 244 IAGVLTHIPAGLGVLEAVFIALLQHE-ASRGSLLAGLIAYRAIYFIVPLLIALVMYLGVE 302
           IAGV+ HIPAG+GVLEAVFIALL  E  S+G+++A L+AYR +Y+ +PLL+AL+ YL +E
Sbjct: 245 IAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICYLLLE 304

Query: 303 AKAKALRVKKTPA 315
           ++AK LR K   A
Sbjct: 305 SQAKKLRAKNEAA 317