Pairwise Alignments

Query, 179 a.a., capsular biosynthesis protein from Pseudomonas simiae WCS417

Subject, 869 a.a., Periplasmic protein involved in polysaccharide export from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 105 EFY--IGGEVKNPGGYPFQPGLTLRRAVTLAGGLTERASEKRIIIISD-QDGAKS 156
           E+Y  I GEV++PG YP+  G+T    +  AGG TE AS + + I    QDG ++
Sbjct: 498 EYYLKISGEVRDPGIYPYSEGMTAEDLIQQAGGFTESASRQDVEIARRIQDGREN 552



 Score = 37.0 bits (84), Expect = 9e-07
 Identities = 27/139 (19%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 15  LVLSTAVSAANDSQYKLASGDVIRINVFGEKDLSFDEVRLTDVGSFSYPFVGELHAKGKT 74
           L     ++ A  S Y L  GD++ ++V+G  + ++ E  +T  G+     +G +   G +
Sbjct: 148 LTFEPNLNMATPSSYVLGPGDLLYVDVYGASE-NYYESTITPEGNLILENIGPIGLSGLS 206

Query: 75  AAQLERLITQKLKGEYL--------VDPRVSVSVLHYREFYIGGEVKNPGGYPFQPGLTL 126
            ++  +++  +L   Y            ++S+  +   + ++ GE++ PG +      T+
Sbjct: 207 ISEATKVVKNRLSRFYADMQGDNPSTFMQLSLGNVRSIKVHLVGELRLPGTFTLSAFSTV 266

Query: 127 RRAVTLAGGLTERASEKRI 145
             A+  AGG     + + I
Sbjct: 267 FNALYAAGGPNTNGTMRNI 285



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 110 GEVKNPGGYPFQPGLTLRRAVTLAGGLTERASEKRIII 147
           G VK P  +  QPG T    +  AGG T+ A   ++ +
Sbjct: 333 GAVKRPMTFEVQPGETFEDVLAFAGGFTDNAYTNKVSV 370



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 81  LITQKLKGEYLVDPRVSVSVLHYREFYIGGEVKNPGGYPFQPGLTLRRAVTLAGGLTERA 140
           + T K   EY +    +V   +     + G V   G Y    GLTL + +T A GL   A
Sbjct: 390 IFTVKAGDEYTIG---TVLNRYNNRVQLKGAVFRAGNYALSEGLTLSQLITRADGLRGDA 446

Query: 141 SEKRIIIISDQD---------GAKSTRKGSLDSTLSPGDTITINA 176
              R  I+   +           K+   G  D +L   D I I++
Sbjct: 447 YLDRASILRTHEDLSTSVIPVNLKAVMAGDQDVSLEADDIIRISS 491



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 110 GEVKNPGGYPFQPGLTLRRAVTLAGGLTERASEKRIIII 148
           G+V  P    ++ G +++  +  AGG   RA  KR  ++
Sbjct: 763 GDVIYPTTVRYENGRSMKYYIDRAGGFDSRAKRKRTYVV 801