Pairwise Alignments

Query, 460 a.a., O-antigen polymerase from Pseudomonas simiae WCS417

Subject, 466 a.a., Lipid A core - O-antigen ligase from Alteromonas macleodii MIT1002

 Score =  243 bits (620), Expect = 1e-68
 Identities = 166/478 (34%), Positives = 243/478 (50%), Gaps = 59/478 (12%)

Query: 2   VLSLIRLERMLVFAVLAVIVWLPLPLGSNRDWAIGLM--AAFTGG--------------- 44
           ++++++ E+ L   +L  + WLPL LG+NR WA  LM  + F+ G               
Sbjct: 1   MVNVLKTEKFLFGFLLFTLFWLPLSLGANRPWAWALMQMSLFSIGGTLVLLNTSLLHQLY 60

Query: 45  -----------ITLAWVAVNLKSGKPVFGSSATRMVAMPMLALLLACQAW-----VACQW 88
                      I LAW  +N+    P     A R    P     L  + W     V  +W
Sbjct: 61  TKYRTFIILWVIFLAWQLINIVP-LPFALVEAIR----PERVSYLLSEQWGNQENVTSKW 115

Query: 89  LFGLSQDNGATFQYLMLGLVYCVLFVMVTGLFQSRRRLTLLLAVLVISGTVQAFYGAWMT 148
           L  LS D G +       L YC LF +   L  S +RL   L V+  +G  QA YGA   
Sbjct: 116 L-SLSFDVGQSDVTFFKSLAYCFLFFIALTLINSAKRLRYTLIVISAAGIFQAIYGALEV 174

Query: 149 LSGTEW-LAFTPKTAYIGDATGSYVNRNHFAGYLEMTLACGIGLLLALRDKRSFSWVN-- 205
           LSG ++ L F    ++I  ATGSY+ +NH+A +L + L+  IG L+A   + + +     
Sbjct: 175 LSGIKYSLVFKQPVSHI--ATGSYIYKNHYANFLMLCLSAAIGYLIASLHQDNTTTKRER 232

Query: 206 ---LLQVLMGPKALLRLALVIMVIALVMSHSRMGNMAFFASLLIVGGVFVMYERRNRLRN 262
              L++  +  K L R+ ++IMVIALVMS SRMGN AFF ++ I   + ++Y +  +   
Sbjct: 233 LRRLVKFWLSNKVLFRIGIIIMVIALVMSRSRMGNSAFFIAMTITATLGLIYFKPRQKSY 292

Query: 263 SLILCSLIIIDVLVISQYFGLAQLKDRLVNTRLHDVQVNNEVVQSANEVRADVFGYAIPL 322
             +  S++IID+L++S +FGL Q++ RL  T              A E R +V   A+PL
Sbjct: 293 ITLFISMLIIDILLVSSFFGLKQVQQRLEQTNF------------AQESRDEVITDALPL 340

Query: 323 LLERPMAGHGAGTFEAVFQQCPGSNIRLHFDHAHNDYLQILIEFGLAGSFFLALFVVFAL 382
           L E  + G G GTF  V+ Q    +I+  +DHAHN+YLQ  IEFG+ G+F LAL V+   
Sbjct: 341 LGEYGLIGTGGGTFYTVYPQFQSESIQHFYDHAHNEYLQFSIEFGVVGAFVLALLVLLCT 400

Query: 383 IQAFKALGNRQSIFRSGVGFAACMGIISLLIHSSTDFNLQIPANATTFVILSAIAVLA 440
             A  A+ NR+     G  FA+ M  I + +HSS DF LQ PAN   F++L A+  L+
Sbjct: 401 KNALSAVRNRRHPLPRGTAFASIMATIGMALHSSVDFPLQAPANTAIFIVLLALGALS 458