Pairwise Alignments

Query, 839 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

Subject, 873 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  309 bits (791), Expect = 5e-88
 Identities = 230/818 (28%), Positives = 386/818 (47%), Gaps = 50/818 (6%)

Query: 8   FNTDVLDLGDRTNIDLSQFSRSGFILPGTYPMVIKLNTNTLPEQSVAFYP--------PD 59
           FN   L        DLS FSR+     G Y + + LN   L  + +AF          P 
Sbjct: 39  FNPAFLSDDPSAVADLSTFSRNAQAA-GMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPT 97

Query: 60  NDLKGSQACLTPSIVEQFGLKKEKMTQLSWWKGGQCLDFHS-LPGLEAVGDLASASLNVN 118
           +D  G +ACLTP +++  G+       L+    G C D  S +P      D A   L+++
Sbjct: 98  DD-SGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDIS 156

Query: 119 VPQAYLEYTSINWDPPARWDEGISGLMVDYNMTAQSNYQREEG--TRNNVSGNGTVGANA 176
           +PQA +  ++  + PP  WDEGI+ L+++Y  T  ++  R  G    N+       G N 
Sbjct: 157 IPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNL 216

Query: 177 GAWRLRADWQGRFDGGKTDGNQRMEWSRYYAY--RAIPALRAQLVLGEDYLYSDLFDSFR 234
           GAWRLR      ++    D N   +W     Y  R +  L+ +L  G+ Y  S LFDS  
Sbjct: 217 GAWRLRD--YSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLP 274

Query: 235 FTGASLKSDESQLPPNLRGYAPEVVGVAKTNARVIISQQGRILYETVVAAGPFRIQDL-N 293
           F G  L SD++ LP +++G+AP + G+A++NA+V I Q G I+ +  V  G F I DL  
Sbjct: 275 FRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYP 334

Query: 294 DAVTGSLDVKIEEQDGSVHTFQVDTAGVPYLTRPGQVRYKVAAGRPSNLLYGDDGDPFAS 353
            A +G L V+++E DGS++ + V  + VP L R G+++Y        +     +   F+ 
Sbjct: 335 TAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFSQ 394

Query: 354 GEFSWGVSNGWSLFGGGMGDNNYRALSVGIGRDLLAFGAVSVDATQSSATLS-GEELSGK 412
               WG+ +G++L+GG    ++Y AL++G G +L  +GAVS+D TQ+++TL+      G+
Sbjct: 395 ATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQ 454

Query: 413 SYRLQYSKSFDEYDSHVSFAGYRFSEKNYLSMSEYLDARHYGLYD--QLGSGGEYGEGGE 470
           S R  Y+KS  +  +++   GYR+S   + ++ +    R  G  D  +  S     E  +
Sbjct: 455 SLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWAD 514

Query: 471 RRKPIGGSKAAYTATFNKQFRDLGASFYLSYNKQTYWNRPDTQRWNLALSRYFSVGSVKN 530
                   +       N+Q   LG S +++ ++Q+YW+  +    +L    Y    +   
Sbjct: 515 YYNLYYTRRGKVQLDINQQLGGLG-SLFITGSQQSYWHTDEKD--SLLQVGYSDTLAGIA 571

Query: 531 INASLNLHRSEDYNTRDNGMTLSVSVPLGR--------------TGTLTTSVDRDRNGID 576
            + S N ++S     RD    L++SVPL +                T +TS D+  N   
Sbjct: 572 WSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTDKQHNVTQ 631

Query: 577 FSTRYSDRLDERN-SYQVSAG------DDSVSGYLSHTGELADVDLSAS-TEGSRYSSVS 628
            +      LDE N SY +  G       +S +  L + G   + ++  + ++   Y  V+
Sbjct: 632 NAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVN 691

Query: 629 LSARGGATLTPQGGALHRAGTMGGTRLMVDTDGVADVPVRGYGVSTRTNTFGKAVISDIG 688
               GG      G  L +   +G T +++   G A+V V        T+  G AV+    
Sbjct: 692 YGLSGGLVAHAHGVTLSQ--PLGNTNILIAAPGAANVGVVDQ-PGIHTDARGYAVVPYAT 748

Query: 689 SYQRTSASVDLENLPTNVEATQSVTQLTLTEGAIGYRKLEVIAGAKAMAVLRLPDGSSPP 748
           +Y++   ++D+  +  +V+   +VT++  TEGA+   + +   GA+A+  L   +G   P
Sbjct: 749 TYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTLN-HNGKPVP 807

Query: 749 FGALVKNIKQQDTGVLNDGGSVYLSGIQAGGQMTVSWG 786
           FGA V    +    ++++ G VYLSG+ A G + V WG
Sbjct: 808 FGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWG 845