Pairwise Alignments

Query, 839 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

Subject, 809 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  288 bits (736), Expect = 1e-81
 Identities = 238/835 (28%), Positives = 398/835 (47%), Gaps = 76/835 (9%)

Query: 20  NIDLSQFSRSGFILPGTYPMVIKLNTNTLPEQSVAFY---PPDNDLKGSQACLTPSIVEQ 76
           N+DLS F + G    GTY + I +N  ++  +++AF      DN L   Q CL+   ++Q
Sbjct: 10  NVDLSVFEKGGQA-EGTYNVDIYINNTSVETKNIAFKNKKSADNKLS-LQPCLSVEQLKQ 67

Query: 77  FGLKKEKMTQLSWWKGGQCLDFHSLPGLEAVGDLASASLNVNVPQAYLEYTSINWDPPAR 136
           +G+K E   +L     G C D   L G  A  ++    L++ +PQ  L      + P + 
Sbjct: 68  WGVKTENFPELKNDPNG-CTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSE 126

Query: 137 WDEGISGLMVDYNMTAQSNYQREEG-TRNNVSGNGTVGANAGAWRLRADWQGRFDGGKTD 195
           WDEGI+  +++Y+ T   ++  +E  T N+   N   G N GAWR R      +     D
Sbjct: 127 WDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFR-----NYSTWNHD 181

Query: 196 GNQRMEWSRYYAY--RAIPALRAQLVLGEDYLYSDLFDSFRFTGASLKSDESQLPPNLRG 253
            + +  W   Y Y  R I  L+ QL+ GE+   +D+FDS  F G  + SD+  LP +++G
Sbjct: 182 SDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKG 241

Query: 254 YAPEVVGVAKTNARVIISQQGRILYETVVAAGPFRIQDLNDAV-TGSLDVKIEEQDGSVH 312
           +AP + GVAK++A+V + Q G  +Y+T V AGPF I DL     +G L V I+E DGS  
Sbjct: 242 FAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQ 301

Query: 313 TFQVDTAGVPYLTRPGQVRYKVAAGRPSNLLYGDDGDPFASGEFSWGVSNGWSLFGG--- 369
            F V  A VP L R G ++Y +  GR  +         FA     +G++ G + +GG   
Sbjct: 302 HFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIES 361

Query: 370 GMGDNNYRALSVGIGRDLLAFGAVSVDATQSSATLSG-----EELSGKSYRLQYSKSFDE 424
            + ++ Y A  +G G +L   GA+S+D T S + +       + L+G+S+R++YSK    
Sbjct: 362 TLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQS 421

Query: 425 YDSHVSFAGYRFSEKNYLSMSEYLDARHYGLYDQLGSGGEYGEGGERRKPIGGSKAAYTA 484
             ++ + AGYR+S K+Y ++ + LD           S   + +    R  +  S+     
Sbjct: 422 TGTNFTVAGYRYSTKDYYALEDVLDTY---------SDNSHYDHVRNRTDLSLSQDI--- 469

Query: 485 TFNKQFRDLGASFYLSYNKQTYWNRPDTQRWNLAL---SRYFSVGSVKNINASLNLHRSE 541
                   +  S  L+   + YWN  DT   +L +   + + +V    N + +LN   S+
Sbjct: 470 --------IYGSISLTLYNEDYWN--DTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQ 519

Query: 542 DYN-----TRDNGMTLSVSVPLGRTGTLTTSVDRDRNGIDFSTRYSDRLD-----ERN-S 590
           D +     + D  +++++S+PL      T +     +  D  T ++  L+     ++N S
Sbjct: 520 DEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLS 579

Query: 591 YQVSAG----DDSVSGYLSHT--GELADVDLSASTEGSRYSSVSLSARGGATLTPQGGAL 644
           + V  G    + + SG +S T  G  AD++   S + +    ++   + G  L   G  L
Sbjct: 580 WSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYD-NHMRRLNYGVQVGVLLHRNGLTL 638

Query: 645 HRAGTMGGTRLMVDTDGVADVPVRGYGVSTRTNTFGKAVISDIGSYQRTSASVDLENLPT 704
            +   M  T ++V   G A VPV        T+  G AV+     Y R   S+D   +  
Sbjct: 639 SQP--MDDTIILVKAPGAAGVPVNNE-TGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRK 695

Query: 705 NVEATQSVTQLTLTEGAIGYRKLEVIAGAKAMAVLRLPDGSSPPFGALVKNIKQQD--TG 762
           N+E   +   L  T GA+   + +   G KA+ VL   +    PFGA V ++ + D  + 
Sbjct: 696 NIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSS 755

Query: 763 VLNDGGSVYLSGIQAGGQMTVSWG--GAERCTLT--LPNILPADGLTNILNLPCQ 813
            + D G  +L+G++  G++ V WG   A++C ++  +P+   A G+  IL+  CQ
Sbjct: 756 FVGDAGQAWLTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGV-EILHEQCQ 809