Pairwise Alignments

Query, 839 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

Subject, 878 a.a., outer membrane usher protein, type 1 fimbrial synthesis (NCBI) from Escherichia coli BW25113

 Score =  312 bits (800), Expect = 5e-89
 Identities = 240/847 (28%), Positives = 388/847 (45%), Gaps = 57/847 (6%)

Query: 1   MASGDVQFNTDVLDLGDRTNIDLSQFSRSGFILPGTYPMVIKLNTNTLPEQSVAFYPPDN 60
           ++S D+ FN   L    +   DLS+F     + PGTY + I LN   +  + V F   D+
Sbjct: 42  LSSADLYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDS 101

Query: 61  DLKGSQACLTPSIVEQFGLKKEKMTQLSWWKGGQCLDFHSL-PGLEAVGDLASASLNVNV 119
           + +G   CLT + +   GL    +  ++      C+   ++     A  D+    LN+ +
Sbjct: 102 E-QGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTI 160

Query: 120 PQAYLEYTSINWDPPARWDEGISGLMVDYNMTAQSNYQREEGTRNNVSGNGTVGANAGAW 179
           PQA++   +  + PP  WD GI+  +++YN +  S   R  G  +    N   G N GAW
Sbjct: 161 PQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAW 220

Query: 180 RLRADWQGRFDGGKTDGNQRMEWSRYYAY--RAIPALRAQLVLGEDYLYSDLFDSFRFTG 237
           RLR +    ++        + +W     +  R I  LR++L LG+ Y   D+FD   F G
Sbjct: 221 RLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRG 280

Query: 238 ASLKSDESQLPPNLRGYAPEVVGVAKTNARVIISQQGRILYETVVAAGPFRIQDLNDA-V 296
           A L SD++ LP + RG+AP + G+A+  A+V I Q G  +Y + V  GPF I D+  A  
Sbjct: 281 AQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGN 340

Query: 297 TGSLDVKIEEQDGSVHTFQVDTAGVPYLTRPGQVRYKVAAGRPSNLLYGDDGDPFASGEF 356
           +G L V I+E DGS   F V  + VP L R G  RY + AG   +     +   F     
Sbjct: 341 SGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTL 400

Query: 357 SWGVSNGWSLFGGGMGDNNYRALSVGIGRDLLAFGAVSVDATQSSATLSGE-ELSGKSYR 415
             G+  GW+++GG    + YRA + GIG+++ A GA+SVD TQ+++TL  + +  G+S R
Sbjct: 401 LHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVR 460

Query: 416 LQYSKSFDEYDSHVSFAGYRFSEKNYLSMSEYLDARHYGLYDQLGSGGEYGEGGERRKPI 475
             Y+KS +E  +++   GYR+S   Y + ++   +R        G   E  +G  + KP 
Sbjct: 461 FLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSR------MNGYNIETQDGVIQVKP- 513

Query: 476 GGSKAAYTATFNKQ-------FRDLG--ASFYLSYNKQTYWNRPDT-QRWNLALSRYFSV 525
                 Y   +NK+        + LG  ++ YLS + QTYW   +  +++   L+  F  
Sbjct: 514 -KFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAF-- 570

Query: 526 GSVKNINASLNLHRSEDYNTRDNGMTLSVSVPLG-----------RTGTLTTSVDRDRNG 574
               N   S +L ++     RD  + L+V++P             R  + + S+  D NG
Sbjct: 571 -EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629

Query: 575 --IDFSTRYSDRLDERN-SYQVSA-------GDDSVSGY--LSHTGELADVDLSASTEGS 622
              + +  Y   L++ N SY V         G+   +GY  L++ G   + ++  S    
Sbjct: 630 RMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYS-HSD 688

Query: 623 RYSSVSLSARGGATLTPQGGALHRAGTMGGTRLMVDTDGVADVPVRGYGVSTRTNTFGKA 682
               +     GG      G  L +   +  T ++V   G  D  V       RT+  G A
Sbjct: 689 DIKQLYYGVSGGVLAHANGVTLGQ--PLNDTVVLVKAPGAKDAKVENQ-TGVRTDWRGYA 745

Query: 683 VISDIGSYQRTSASVDLENLPTNVEATQSVTQLTLTEGAIGYRKLEVIAGAKAMAVLRLP 742
           V+     Y+    ++D   L  NV+   +V  +  T GAI   + +   G K +  + L 
Sbjct: 746 VLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLL--MTLT 803

Query: 743 DGSSP-PFGALVKNIKQQDTGVLNDGGSVYLSGIQAGGQMTVSWGGAERCTLTLPNILPA 801
             + P PFGA+V +   Q +G++ D G VYLSG+   G++ V WG  E         LP 
Sbjct: 804 HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPP 863

Query: 802 DGLTNIL 808
           +    +L
Sbjct: 864 ESQQQLL 870