Pairwise Alignments

Query, 525 a.a., transposase from Pseudomonas simiae WCS417

Subject, 583 a.a., Mobile element protein from Variovorax sp. SCN45

 Score =  422 bits (1084), Expect = e-122
 Identities = 235/563 (41%), Positives = 326/563 (57%), Gaps = 44/563 (7%)

Query: 1   MISPPSLDQLNPEQLRA----LATQVMQRVETLDHQVDTLGKTVETMGRKI--------H 48
           M+    L   NP  L A    L  Q++QRV+    Q+   G+ +    + +         
Sbjct: 13  MLGARDLPVANPSGLSAETAALVAQLLQRVQDQQQQLAEHGRVLAQRDQALAERDALLQR 72

Query: 49  RDRTV------IEKLTHEIAQLKRFKFAKRSEQHSPAQAGLLDDLIDTDIAAIEAELEAL 102
           +DR +      IEK+T E+A+LKR+KF  +SE  +  Q  L ++ +  D A +  +LE L
Sbjct: 73  KDREIALREAKIEKITFELARLKRWKFGAKSEAMNAEQRRLFEETLAEDEAGLREQLERL 132

Query: 103 QAKPASIET------------KQKPKRTALPPQFPRTLIHHEPDNTQC---ACGCALKRI 147
           + + A+                ++P+R   P    R   HHEP+ T C    CG  + RI
Sbjct: 133 RREAAAAAAAAAASDTTTKAPSRRPRRNPFPDHLRRVEHHHEPERTDCLEPGCGRPMTRI 192

Query: 148 GEDVSEKLDYTPGVFTVERHIRGKWVCDDCETLIQAPVPAQIIDKGIPTAGLLAQVMIAK 207
           G++VSE+LD  P  F V RHI GKW C  C+ L QAP  A++I+ GI  +G +A  +I++
Sbjct: 193 GQEVSERLDIVPAEFFVHRHIYGKWACRCCQVLRQAPSVAEVIEGGIAASGFVAHTLISR 252

Query: 208 YGDHLPLYRQEQIFGRAGLAIPRSTLAQWVGTCGVQLQPLVDALRGVVLGHNVVHADETP 267
           + DH+P YRQ  I  R+G+  PRSTLA   G  G  LQPL +A R  +L   V+HADETP
Sbjct: 253 FVDHMPYYRQTTINARSGVHTPRSTLASITGQAGAALQPLHEAHRRFILSCAVLHADETP 312

Query: 268 VQVLMPGAKKTHRAYVWAYASSAFADIKAVVYDFTPSRAGEHARRFL-------QDWKGK 320
           V +L PGA KT RAYVWAYA S    +  V+Y+F P R  ++   FL       + W G 
Sbjct: 313 VSLLDPGAGKTRRAYVWAYARSWHDKVPGVIYEFCPGRGAQYPLAFLGGRERHGRRWSGT 372

Query: 321 LVCDDFGGYKASFS--LGVTEIG--CMAHARRKFFELHATNKSQLAEQALRYIQVLYEIE 376
           L+ D +  Y+      L    +G  C AHARR F EL     S +  +A+R    +Y +E
Sbjct: 373 LLSDRYSAYETVVDPRLYPDRLGAACAAHARRNFEELTHDGTSVVGLEAVRRFARIYGVE 432

Query: 377 REVRDLEPDLRRRIRQEKAAPAMDVLHTWMIAQRERMHDGVAIAKAFDYSLKRWTALSRY 436
            +++DL  D RR  RQ+ A P  + L  W+  +R  + DG   AKA DY+L  WTAL+R+
Sbjct: 433 AQLQDLSDDDRRAQRQQLARPLWEELKHWLQLERRLVADGGPTAKAIDYTLGHWTALTRH 492

Query: 437 LDDGAVPIDNNHAEQQIRPWALGRKNWLYAGSLRSGQRAAALMSLIQSAKLNGHDPYAYL 496
           L+DGAV IDNNH E+QI+PWA+GR+ W++ GS  +GQRAA +MSL+QSA+LNGHDP+AYL
Sbjct: 493 LNDGAVAIDNNHLERQIKPWAMGRRAWMFVGSELAGQRAAIVMSLVQSARLNGHDPWAYL 552

Query: 497 KDVFTRLPTQRASEIAELLPHNW 519
           +DV  RLPTQRAS+I +LLPH W
Sbjct: 553 RDVLQRLPTQRASQIEDLLPHRW 575