Pairwise Alignments

Query, 525 a.a., transposase from Pseudomonas simiae WCS417

Subject, 536 a.a., Mobile element protein from Sphingobium sp. HT1-2

 Score =  292 bits (748), Expect = 2e-83
 Identities = 180/491 (36%), Positives = 253/491 (51%), Gaps = 21/491 (4%)

Query: 53  VIEKLTHEIAQLKRFKFAKRSEQHSPAQAGL---LDDLI--DTDIAAIEAELEALQAKPA 107
           V++ L   IA+LK+  F K SE+       L   L+D++       A+ +++E  +A   
Sbjct: 39  VVQALRLRIAKLKKQAFGKSSEKIEREIEQLELALEDILVAAAQTVALPSDVEEDEATAH 98

Query: 108 SIETKQKPKRTALPPQFPRTLIHHEPDNTQCACGCALKRIGEDVSEKLDYTPGVFTVERH 167
               +   +R  +    PR     +P +    CG  L+ +GEDVSE ++       V   
Sbjct: 99  VDSARAMARRPRVASDTPRERKELDPGSACPDCGGELRLVGEDVSEIIEMITAKLKVIEV 158

Query: 168 IRGKWVCDDCETLIQAPVPAQIIDKGIPTAGLLAQVMIAKYGDHLPLYRQEQIFGRAGLA 227
            R K  C  CE ++Q P P++ I   +  + LLA V+++K+ DHLPLYRQ +I  R G  
Sbjct: 159 ARPKKSCRCCEKMVQVPAPSRPIPGSMAGSSLLAYVLVSKFDDHLPLYRQNEILTRMGAD 218

Query: 228 IPRSTLAQWVGTCGVQLQPLVDALRGVVLGHNVVHADETPVQVLMPG------AKKTHRA 281
           IPRSTLA W G     LQPL++ +   VL   V+HAD+TP+QVL          K   + 
Sbjct: 219 IPRSTLADWCGKAMRTLQPLIERIEASVLASIVIHADDTPIQVLDHTRRAKGLGKGVKQG 278

Query: 282 YVWAYASSAF----ADIKAVVYDFTPSRAGEHARRFLQDWKGKLVCDDFGGYKASFSLGV 337
            +W Y         A    VVY F P+   EH +  L +  G L  D + GY   +  G 
Sbjct: 279 RIWGYVCDQRPWNGAAPPGVVYRFAPNWKAEHVQNHLCNASGILQADAYKGYAKLYEPGA 338

Query: 338 T------EIGCMAHARRKFFELHATNKSQLAEQALRYIQVLYEIEREVRDLEPDLRRRIR 391
                  E  C AH RR F ++   NKS +A +AL  I  LY+IERE+     D+RR +R
Sbjct: 339 DGEPRFLEAACFAHWRRDFHDIWKANKSPIAREALDRIGQLYDIEREIAGKPADVRRAVR 398

Query: 392 QEKAAPAMDVLHTWMIAQRERMHDGVAIAKAFDYSLKRWTALSRYLDDGAVPIDNNHAEQ 451
           QE + P ++ L  W   Q  R+     +A A  Y L RW A S +++DG V IDNN AE+
Sbjct: 399 QEHSKPKLEALRAWAEQQLTRIPVKGDLASAIRYGLGRWHAFSLFIEDGRVAIDNNAAER 458

Query: 452 QIRPWALGRKNWLYAGSLRSGQRAAALMSLIQSAKLNGHDPYAYLKDVFTRLPTQRASEI 511
            +RP  LGR+NWL+AGS    +  A  M+LI+SAK+NG DP AYL DV  R+   + + I
Sbjct: 459 AVRPIGLGRRNWLFAGSEAGAETLARAMTLIESAKMNGLDPQAYLADVLGRIHDHKINRI 518

Query: 512 AELLPHNWTHL 522
            ELLP  W  L
Sbjct: 519 DELLPWKWKPL 529