Pairwise Alignments

Query, 525 a.a., transposase from Pseudomonas simiae WCS417

Subject, 512 a.a., IS66-like element ISEc8 family transposase from Escherichia coli ECRC101

 Score =  309 bits (792), Expect = 1e-88
 Identities = 180/489 (36%), Positives = 269/489 (55%), Gaps = 19/489 (3%)

Query: 40  VETMGRKIHRDRTVIEKLTHEIAQLKRFKFAKRSEQHSPAQAGLLDDLIDTDIAAIEAEL 99
           +  +  K+      I+ L  ++ +L+R  F  RSE+ S   A +     + D+  ++ E 
Sbjct: 23  IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQM-----EADLNRLQKES 77

Query: 100 EALQAKPASIETKQKPKRTALPPQFPRTLIHHEPDNTQCA-----CGCALKRIGEDVSEK 154
           + L  +      ++  ++T     FP +L   E      A     CG +L  +GED +E+
Sbjct: 78  DTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQ 137

Query: 155 LDYTPGVFTVERHIRGKWVCDDCETLIQAPVPAQIIDKGIPTAGLLAQVMIAKYGDHLPL 214
           L+     F V R +R K  C  C+ ++QAP P++ I++GI   GLLA+V+ +KY +H PL
Sbjct: 138 LELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPL 197

Query: 215 YRQEQIFGRAGLAIPRSTLAQWVGTCGVQLQPLVDALRGVVLGHNVVHADETPVQVLMPG 274
           YRQ +I+GR G+ + RS L+ WV  C   L PL +AL G V+    +HAD+TPVQVL+PG
Sbjct: 198 YRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPG 257

Query: 275 AKKTHRAYVWAY------ASSAFADIKAVVYDFTPSRAGEHARRFLQDWKGKLVCDDFGG 328
            KKT    +WAY      A SA A   AV + ++P R G H +  L  + G L  D + G
Sbjct: 258 NKKTKTGRLWAYVRDDRNAGSALA--PAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAG 315

Query: 329 YKASF-SLGVTEIGCMAHARRKFFELHATNKSQLAEQALRYIQVLYEIEREVRDLEPDLR 387
           +   + + G+TE  C AHARRK  ++H    S L E+AL  I  LY IE ++R +  + R
Sbjct: 316 FNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR 375

Query: 388 RRIRQEKAAPAMDVLHTWMIAQRERMHDGVAIAKAFDYSLKRWTALSRYLDDGAVPIDNN 447
              RQ K  P +  L +W+  + + +     +AKAF Y+L +W AL+ Y +DG V IDNN
Sbjct: 376 LAERQRKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYANDGWVEIDNN 435

Query: 448 HAEQQIRPWALGRKNWLYAGSLRSGQRAAALMSLIQSAKLNGHDPYAYLKDVFTRLPTQR 507
            AE  +R  +LGRKN+L+ GS   G+R A L SLI + KLN  DP +YL+ V   +    
Sbjct: 436 IAENALRAVSLGRKNFLFFGSDHGGERGAPLYSLIGTCKLNDVDPESYLRHVLGVIADWP 495

Query: 508 ASEIAELLP 516
            + ++ELLP
Sbjct: 496 VNRVSELLP 504