Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  247 bits (631), Expect = 4e-70
 Identities = 149/391 (38%), Positives = 214/391 (54%), Gaps = 24/391 (6%)

Query: 22  DGLRLVVKPTGRKSWLLRFQLAGRRREMGLGSF--------------PEVSLKKARQAAS 67
           +GL L ++  G K W LR ++  RRR++GLG +                +SL +AR  A 
Sbjct: 34  EGLHLRLEG-GAKVWALRLKIGERRRDIGLGRYNGKIGLTLEQSVREEGLSLAEARDKAR 92

Query: 68  AKRSQLSDGIDPLAARDLERAAQREAERVSEAKKLKFETLATE-YRDAHGAMWSEKWRKG 126
             R+++  G+DP+     E+  Q++A  +  AK   F+  A     D  G   + K  K 
Sbjct: 93  EIRAKVRSGVDPIE----EKRVQKQAAHIGTAKSKTFKECAELCISDKSGEWKNGKHVKQ 148

Query: 127 WLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDAAKARNL 186
           W   LE YA+  +GKL    +    +L VL+PIWATK  TA  +RG+IE VL+ AK    
Sbjct: 149 WSATLETYAYPKLGKLPVSSVDRGLILDVLRPIWATKGETASRLRGRIETVLNWAKVNGY 208

Query: 187 REGENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPSWAAQLL 246
           R+GENPA W+G+L++ LS+ +K     R H  +L + ++   M  LR      + A +  
Sbjct: 209 RDGENPAAWKGNLEHSLSKRQK---LTRGHHASLPYAELGSFMADLRKRDGISARALEFA 265

Query: 247 IMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGSA 306
           I+T AR+  VR A W E DL+   W +P ERMK      +PL++ VV L+K++PR  GS 
Sbjct: 266 ILTVARSGEVRKATWAEIDLDRKMWVIPAERMKAGKEHRVPLSDAVVALLKALPRVAGSD 325

Query: 307 FLFPGQGKTGVMHANAVRTLLHGIGYEHITRHGFRSSFRDWAGECTHYPREVCEMALAHD 366
           ++FP   + G M   A+  +L  +    +T+HGFRS+FR+WAGE T YPREV E ALAH 
Sbjct: 326 YVFPAP-RGGAMSDMALTAVLKRMDRAGLTQHGFRSTFREWAGEVTAYPREVIEHALAHS 384

Query: 367 ERDQTEGAYSRSDFLDKRRLLMNDWSKFINT 397
             D+ E AY R   L KR  LM DW+ +  T
Sbjct: 385 LADKAEAAYQRGSLLPKRVKLMADWATYAGT 415