Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  151 bits (382), Expect = 3e-41
 Identities = 119/382 (31%), Positives = 189/382 (49%), Gaps = 24/382 (6%)

Query: 23  GLRLVVKPTGRKSWLLRFQLAGRRREMGLGSFPEVSLKKARQAASAKRSQLSDGIDPLAA 82
           GL L+V P G K W  R+ L  R     +G +P ++LK+AR+ A+  RS +++GI+P+  
Sbjct: 30  GLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLITLKEARRRATESRSLIANGINPV-- 87

Query: 83  RDLERAAQREAERVSEAKKLK--FETLATEYRDAHGAMWSEKWRKGWLRKLELYAFAHIG 140
                  Q   E+  +A  +   F+ +A ++       WSE + K     LE   +  +G
Sbjct: 88  ------EQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYAKQVRSALEKDVYPVLG 141

Query: 141 KLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDAAKARNLREGENPARWRGHLD 200
           K S  DI   +VL +LQ    T    A ++R +I ++   A    L    NP      LD
Sbjct: 142 KRSIVDITARDVLALLQKKERTAPEQARKLRRRIGEIFKFAVITEL-VTRNPV---ADLD 197

Query: 201 NLLSRAEKKKARKREHFEALRWQDVPDLMIKL-RANSTPPSWAAQLLIMTSARAHMVRFA 259
             L      KAR+  H   +   ++P     L RA S     A +LLI+T+ R   +R  
Sbjct: 198 TAL------KARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLC 251

Query: 260 RWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVK-SIPRDEGSAFLFPGQGKTGVM 318
           RW+  +LE  T +LP E MK R   V+PL+ + V L++    R   SAF+FPG+     +
Sbjct: 252 RWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPL 311

Query: 319 HANAVRTLLHGIGYEHI-TRHGFRSSFRDWAGECTHYPREVCEMALAHDERDQTEGAYSR 377
            A+A+   L  IGY+ I T HG+R++F     E   Y  +  E+ LAH  +    G Y++
Sbjct: 312 SASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKG-IRGVYNQ 370

Query: 378 SDFLDKRRLLMNDWSKFINTAI 399
           + +L +RR +M D++  I++ +
Sbjct: 371 AAYLKQRRAMMQDYADAIDSIL 392