Pairwise Alignments

Query, 632 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  353 bits (907), Expect = e-101
 Identities = 242/594 (40%), Positives = 343/594 (57%), Gaps = 44/594 (7%)

Query: 52  LEHG---RLLESRERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSER 108
           LE G   RLL  R RL  ++     E++ L  +   AG  V+L DA+    N +    ++
Sbjct: 62  LEQGHDLRLLLERNRL--LIDAVTPELDYLVARQGKAG-IVILGDAQA---NVLAIEGQK 115

Query: 109 KIFERAGL---WLGADWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVF 165
            + +R GL     G+ WSE+  GTN IGT +VE +   I+  EH+  R +  +C++ P+ 
Sbjct: 116 HVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLR 175

Query: 166 DPQGDLLAVLDVSSAREAVSRQSQFHTMALVNLSAKMIESCYFLRHFEHHWLLRFHLQAE 225
           DP+G+++ VLD++  RE V  Q Q  +++ + L+A  IES  F        +L FH + +
Sbjct: 176 DPRGEVIGVLDIT--REGVMAQPQ-DSLSTLMLAAGNIESRLFGLCHPDQLVLAFHSRPQ 232

Query: 226 SVGLFSEGLLAFDGDGRICAVNQSALNLLGQVRGGLLGHPVEAFFDCSLDQLLGRASANA 285
            +     GLLA   DG + A N  A  LL   R  L+G         S D L  R+ A  
Sbjct: 233 YLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHELIGRR-------STDLLGERSPAFI 285

Query: 286 TASWP-----LRTRDGRQLFAALR----GQVRSASTPFVKP----EPAPLPGICLGDPTL 332
              W      ++T  G   F AL+    G+V + STP  KP    +   L  +  GD  L
Sbjct: 286 ARLWQGGVSSVQTAKGEFYFRALQLPRHGRV-TPSTPSSKPALSKQSPALDALAGGDQRL 344

Query: 333 QQDFRKALRVFERDVPLLINGETGSGKEAFAKAVHLASQRADKAFVALNCAAIPESLIES 392
            ++ R A +     +P+L+ GETG+GKE  A+A+H AS RADK FVA+NCAAIPE LIES
Sbjct: 345 ARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIES 404

Query: 393 ELFGYRGGSFTGARKEGMQGKLQQADGGTLFLDEIGDMPLALQTRLLRVLEDRLVVPLG- 451
           ELFGYR G+FTG+R+ GM G+L QA GGTLFLDEIGDMPLALQ RLLRVL++R V PLG 
Sbjct: 405 ELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGA 464

Query: 452 GEPQAVNVRIISATHRNLLERVQDGSFREDLYYRLNGLEVGLPPLRERSDKAQLLDFLLT 511
           G+ Q ++V +I ATHR+L   VQ+  FREDL+YR+NG+ + LP LRER D A ++  LL 
Sbjct: 465 GDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALRERDDLAAIIQGLL- 523

Query: 512 QEANGEPVALDPSARGALLAFAWPGNVRQLRTVLRTLVALCDEGR--VGLEDLPAQIRQA 569
            +A+   V LDP+    L  F WPGN+RQL  V+RT +A+ ++G   + L+ L   +   
Sbjct: 524 DKADARGVTLDPALTALLEGFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLD- 582

Query: 570 RPVAVAQTKPLESPLEDAERLALLTALQQQRWHMTHTAEQLGVSRNTLYRKLRR 623
               +A +      L+D+E   +  AL + + +++  A  LG+SR TLYRKL++
Sbjct: 583 ---ELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQ 633