Pairwise Alignments

Query, 632 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  929 bits (2401), Expect = 0.0
 Identities = 481/669 (71%), Positives = 535/669 (79%), Gaps = 41/669 (6%)

Query: 1   MHNDHFSRHAQQVLTVAHGR--DPSSDPSIARSWLRCLEDYHLDPAQTIAPTVLEHGRLL 58
           M ++HF+RHA+QV +VAHG   +  SDPSIARSWLRCLEDYHLDPA   AP VLEHGRLL
Sbjct: 1   MQSNHFTRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLL 60

Query: 59  ESRERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGLWL 118
           ESRERL QVL IA  EMNSLHQQLSGAGHAVLLTDARGVILNCV+AP+ER+ FERAGLWL
Sbjct: 61  ESRERLHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWL 120

Query: 119 GADWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVFDPQGDLLAVLDVS 178
           GADWSEA EGTNGIGTCLVERQ+LTIH++EHFRGRHTGLTCSASPVFDP GDLLAVLDVS
Sbjct: 121 GADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVS 180

Query: 179 SAREAVSRQSQFHTMALVNLSAKMIESCYFLRHFEHHWLLRFHLQAESVGLFSEGLLAFD 238
           SAR  VSRQSQFHTMALVNLSAKMIESCYFLRHFE  WLLRFHLQAESVGLFSEGLLAFD
Sbjct: 181 SARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFD 240

Query: 239 GDGRICAVNQSALNLLGQVRGGLLGHPVEAFFDCSLDQLLGRASANATASWPLRTRDGRQ 298
           GDGRICA NQSALNLLG VRGG+LG P+E FF CS D++  RA+   +A WPLRT DGRQ
Sbjct: 241 GDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQ 300

Query: 299 LFAALRGQVRSA--STPFVKPEPAPL--PGICLGDPTLQQDFRKALRVFERDVPLLINGE 354
           +FA+LRGQ R+   S P  +P PA    P +CL DP LQ DFR+++RVFERDVPLL+ GE
Sbjct: 301 VFASLRGQARAPVWSVPAAQPRPAGEVEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGE 360

Query: 355 TGSGKEAFAKAVHLASQRADKAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKL 414
           TG GKEAFA+AVH AS+R  K FVA+NCA+IPESLIESELFGYRGGSFTGARKEGM+GKL
Sbjct: 361 TGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKL 420

Query: 415 QQADGGTLFLDEIGDMPLALQTRLLRVLEDRLVVPLGGEPQAVNVRIISATHRNLLERVQ 474
            QADGGTL LDEIGDMPLALQTRLLRVLE+R VVP+GGEPQAV+VRI+SATHR+LLERV+
Sbjct: 421 LQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGEPQAVDVRIVSATHRDLLERVE 480

Query: 475 DGSFREDLYYRLNGLEVGLPPLRERSDKAQLLDFLLTQEANGEPVALDPSARGALLAFAW 534
            GSFREDLYYRLNGLEV LP +RERSDKAQLLDFLL QE  G+ + ++P AR ALLAF W
Sbjct: 481 QGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQWIDIEPRARQALLAFNW 540

Query: 535 PGNVRQLRTVLRTLVALCDEGRVGLEDLPAQIRQARPVAVAQTKPLESPLE--------- 585
           PGNVRQ+R VLRTLVALC++ R+   DLPA IR + P+A        S  E         
Sbjct: 541 PGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALV 600

Query: 586 --------------------------DAERLALLTALQQQRWHMTHTAEQLGVSRNTLYR 619
                                     DAER AL   L+ + WH+T  AE LG+SRNTLYR
Sbjct: 601 RGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYR 660

Query: 620 KLRRHGIAR 628
           KLR+HGI R
Sbjct: 661 KLRKHGITR 669