Pairwise Alignments

Query, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 496 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Variovorax sp. SCN45

 Score =  275 bits (702), Expect = 3e-78
 Identities = 182/478 (38%), Positives = 247/478 (51%), Gaps = 88/478 (18%)

Query: 11  GVLLAAMTVNALA-ASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLVIDINGA 69
           G +   + V+ +A  + + +VR+W A D TR+  +    +      + +P RL +DI G 
Sbjct: 15  GSIALMLGVHQIARGATILAVRVWPAADYTRVTIESDARLNSQQLVVGSPPRLAVDIEGI 74

Query: 70  TLAAPL-----KVSTANTPITAMRSAQRTPTDLRVVIDLKKVVTPKSFSLAPNAQYGNRL 124
            L   L     K+   +  I  +R  Q  P  +R+V DLK+ V P+ FSLAP A Y +RL
Sbjct: 75  DLNPELRELVGKIKPGDPYINGLRVGQNAPKVVRIVFDLKQAVVPQVFSLAPVAAYKHRL 134

Query: 125 VVDLFDNAA-------------DA------------------------------------ 135
           V+DL+   A             DA                                    
Sbjct: 135 VLDLYPEQAVDPMEALIAERLRDAPRTPQQGGNPAVAGIVPSTPTAPAGDPLGDLMAQQS 194

Query: 136 ---NPPPAPPPSVATV-------------PAVPVNPSQPQVKLPPPP-------PAPAGK 172
               P   PPP VA +             P V   P +P    PPPP       PA A +
Sbjct: 195 MRPGPQTPPPPVVAGIDRPTAPVIVAPPPPVVGTAPVRPIAPSPPPPVAAPRGGPATASR 254

Query: 173 RD--IIVVIDAGHGGEDPGASGSRGQHEKDVVLAIARELQRQINA--MKG--YRAELTRT 226
            D  IIV +D GHGGEDPGA G  G  EKD+VL +A  L+ +INA  + G   RA LTR 
Sbjct: 255 TDRIIIVALDPGHGGEDPGAIGPNGTREKDIVLQVAHRLRERINAGSVNGSPMRAFLTRD 314

Query: 227 GDYFIPLRGRTEIARKKGADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSE 286
            D+F+PL  R + AR+  ADLFVSIHADA  + AA GASVFALS  GA+S  ARW+A+ E
Sbjct: 315 ADFFVPLGVRVQKARRVQADLFVSIHADAFTTPAARGASVFALSQSGASSSAARWMANKE 374

Query: 287 NRSDLIGGAGNVSLDDKDKMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRV-TPLHKQRV 345
           N +D +GG   V++   +  +   LLD+S TA +  SL +G  +L  I  +   LHK +V
Sbjct: 375 NEADKVGG---VNVGGHEAQVQRALLDMSTTAQINDSLKLGGAMLGEIKNIGARLHKGQV 431

Query: 346 EQAGFMVLKSPDIPSILVETGFISNSNEASKLATGSHQQALARSISAGVRQFFQQNPP 403
           EQAGF VLK+PDIPS+LVET FISN  E + L    +Q++LA ++  G++++F QNPP
Sbjct: 432 EQAGFAVLKAPDIPSVLVETAFISNPEEEANLRRVDYQESLADALMRGIQRYFAQNPP 489