Pairwise Alignments

Query, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 485 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  267 bits (683), Expect = 5e-76
 Identities = 177/478 (37%), Positives = 249/478 (52%), Gaps = 85/478 (17%)

Query: 4   RALVAVVGVLLAAMTVNALAASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLV 63
           R L++   ++L   T      + V +VR+W A D TR+  +    +Q   F +T P RL 
Sbjct: 8   RTLLSTGTLVLLLGTQQIARGASVVAVRIWPAEDYTRVTIESDALLQAKQFFVTDPPRLA 67

Query: 64  IDINGATLAAPL-----KVSTANTPITAMRSAQRTPTDLRVVIDLKKVVTPKSFSLAPNA 118
           +DI G  L   L     K+ + +  I  +R+AQ  P  +R+VIDLKK + P+ F+L P A
Sbjct: 68  VDIEGIDLLPGLRELVGKLKSDDPNIAGIRAAQNAPNVVRLVIDLKKPIKPQVFNLEPVA 127

Query: 119 QYGNRLVVDLFDNAADANPP-------------------------------------PAP 141
            Y +RLV DL+      NPP                                     PA 
Sbjct: 128 AYQHRLVFDLYP----LNPPDPLEQLIAQRMKDMDAASERAARLLGLEADKVTKPATPAD 183

Query: 142 PPSVATV-----PAVPVNPSQ---PQVKLPPPP-----------------PA---PAGK- 172
            P    +     P  PV+P+Q   P   +P PP                 PA   P GK 
Sbjct: 184 DPLGELIAGRERPKTPVSPNQSPSPTTPVPKPPLGDSDDTAVAGAGPKGSPAKQPPGGKG 243

Query: 173 ---RDIIVVIDAGHGGEDPGASGSRGQHEKDVVLAIARELQRQINAMK----GYRAELTR 225
              R II+ +D GHGGEDPGA G  G  EK VVL IA +L+ +IN  +      RA +TR
Sbjct: 244 KTERLIIIALDPGHGGEDPGAIGPNGTQEKRVVLQIAHKLRERINETRVNGNPMRAFMTR 303

Query: 226 TGDYFIPLRGRTEIARKKGADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADS 285
             D+F+PL+ R + A++  ADLF+SIHADA  +    GASV+ALS RGATS  A+W+AD 
Sbjct: 304 DKDFFVPLQVRVQKAQRVQADLFISIHADAFLTPRPQGASVYALSTRGATSTAAKWMADK 363

Query: 286 ENRSDLIGGAGNVSLDDKDKMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRV 345
           EN +DL+GG   +++   D  +   L D+S TA +  SL +G  +L ++ ++  LHK +V
Sbjct: 364 ENAADLVGG---LNVKAADAHVRRALFDMSTTAQINDSLKLGSAMLGHVKKIGKLHKPQV 420

Query: 346 EQAGFMVLKSPDIPSILVETGFISNSNEASKLATGSHQQALARSISAGVRQFFQQNPP 403
           EQA F VL++PDIPS+LVET FISN +E  +L    +Q  LA ++  G+  +F +NPP
Sbjct: 421 EQANFAVLRAPDIPSVLVETAFISNPDEEKRLNDPKYQDDLADALVRGIVAYFSKNPP 478