Pairwise Alignments

Query, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 417 a.a., putative amidase (VIMSS) from Escherichia coli BW25113

 Score =  274 bits (701), Expect = 4e-78
 Identities = 167/396 (42%), Positives = 233/396 (58%), Gaps = 20/396 (5%)

Query: 13  LLAAMTVNALAASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLVIDINGATLA 72
           LL+   V+  A SQV +VR+W A   TR+  + +  +++  F L+ P+R+V+DI    L 
Sbjct: 22  LLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLN 81

Query: 73  APLKVSTANTP-----ITAMRSAQRTPTDLRVVIDLKKVVTPKSFSLAPNAQYGNRLVVD 127
           + LK   A        I + R  Q  P  +R+V +LK+ V P+ F+LAP A +  RLV+D
Sbjct: 82  SVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMD 141

Query: 128 LFDNAADANPPPAPPPSVATVPAVPVNPSQPQVKLPP----PPPAPAGK-RDIIVVIDAG 182
           L+     AN      P +A +     N    + ++PP    P P  AG+ R I++++D G
Sbjct: 142 LYP----ANAQDMQDPLLALLE--DYNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPG 195

Query: 183 HGGEDPGASGSRGQHEKDVVLAIARELQRQINAMKGYRAELTRTGDYFIPLRGRTEIARK 242
           HGGED GA G     EKDVVL IAR L+  I      +  +TR  D FIPL+ R   A+K
Sbjct: 196 HGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQK 255

Query: 243 KGADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLDD 302
           + ADLFVSIHADA  S    G+SVFALS +GATS  A++LA ++N SDLIGG        
Sbjct: 256 QRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSK----S 311

Query: 303 KDKMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSIL 362
            D+ +   + D+  + ++  SL  G+ VL+ +G++  LHK +VEQAGF VLK+PDIPSIL
Sbjct: 312 GDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSIL 371

Query: 363 VETGFISNSNEASKLATGSHQQALARSISAGVRQFF 398
           VET FISN  E  KL T + QQ +A SI AG++ +F
Sbjct: 372 VETAFISNVEEERKLKTATFQQEVAESILAGIKAYF 407