Pairwise Alignments

Query, 449 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Pseudomonas simiae WCS417

Subject, 489 a.a., UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) from Variovorax sp. SCN45

 Score =  166 bits (421), Expect = 1e-45
 Identities = 132/471 (28%), Positives = 220/471 (46%), Gaps = 39/471 (8%)

Query: 2   HIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPSQFDPV 61
           HIH +GI G+ M  +A +   LG+ ++GSD      +  +L   GI    G+  +  +  
Sbjct: 7   HIHFVGIGGSGMSGIAEVLLNLGYKISGSDLADSATLR-RLAGLGIGTFVGHAAAHIEGA 65

Query: 62  PDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVLQGRWVLAVAGTHGKTTTSSML 121
            D VV   A+   NP V     K +P V     LA+ +++ +  +A+AGTHGKTTT+S++
Sbjct: 66  -DAVVTSTAVQPDNPEVLAAREKRIPVVPRALMLAE-LMRLKQGIAIAGTHGKTTTTSLV 123

Query: 122 AWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTA 181
           A VL  AG+ P F+IGG   +   +A+LG   + V+EADE D++       F++  P  A
Sbjct: 124 ASVLAAAGLDPTFVIGGRLNSAGANAQLGSGDYIVVEADESDAS-------FLNLLPVMA 176

Query: 182 ILNNLEFDHADIF-PDLAAIERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQT 240
           ++ N++ DH + +  D A +++ F   +  +P  G+ I  T +PA++ ++      PV +
Sbjct: 177 VVTNIDADHMETYGHDFAKLKKAFVDFLHRMPFYGVAILCTDDPAVREIVS-SVTCPVTS 235

Query: 241 TGAGGQWQVKLLSDDGSTFEVLFEGQTQ-GI------VEWDMTGQHNVANALVTLAAARH 293
            G G   QV+ L       ++ F  Q + G+      +  ++ G+HNV NAL  +A A  
Sbjct: 236 YGFGEDAQVRALDVRAVGGQMHFTAQRRNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVE 295

Query: 294 VGVVPSMGIAALSAFKSVKRRMEKVADV-------NGVTIYDDFAHHPTAIATTLDGLRK 346
           +G+        L+ FK V RR +   DV          T+ DD+ HHP  +A T+   R 
Sbjct: 296 LGIPDEAVQRGLAGFKGVGRRFQSYGDVAVQGGDAGTFTVIDDYGHHPVEMAATIAAARG 355

Query: 347 RVGDAPIIAIVEPRSNSMKLGAHRDGLPESVNDADQVVWYAPANLGWDLPAIAA------ 400
              D  ++   +P   +       D   + +  AD V+         + P +AA      
Sbjct: 356 AFPDRRLVLAFQPHRYTRTRDCFED-FVKVIGTADAVL-LGEVYAAGEAPIVAADGRTLA 413

Query: 401 -----LCTVPSLVCDSIEGIIEHVKRLAKPGTHVVVMSNGGFGGLHGKLAE 446
                   V  +  D I  + + +   A+PG  V+ M  G  G +  K+ E
Sbjct: 414 RALRVAGKVEPVFVDDIAAMPQAILDNARPGDVVLSMGAGSIGAVPAKVVE 464