Pairwise Alignments

Query, 796 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 918 a.a., Sensor histidine kinase/response regulator from Pseudomonas sp. S08-1

 Score =  305 bits (780), Expect = 1e-86
 Identities = 216/647 (33%), Positives = 328/647 (50%), Gaps = 31/647 (4%)

Query: 4   LLIFLLSGLPLFA-NAIEFNQDTRSLPLGRAIQVLEDPTDALTIADVSAPSATPQFKPHD 62
           +L+  LSG PL+A +    ++D   L L   +   ED  D    A+         F P  
Sbjct: 8   VLLLCLSG-PLWALSPAPLDRDELRLSLAPYMGYYED-RDGKLDAETVQRLPDDAFIPVQ 65

Query: 63  KDTLNAGYSRSVFWLKVNLHYLPTQAEAQRTWLLELAYPPLDHLDLYLPDSSGTYRLAGR 122
            D  N G + SV+W KV L     Q     +  LE+ Y  LDH+D+YL D  G  +    
Sbjct: 66  GDHANLGKNASVWWFKVRLVNGRPQP---LSGYLEVNYALLDHIDVYLQDGDGNLQRQ-H 121

Query: 123 TGDALPFSAREIRQNNYLFKVDFAPGEAKTVYLRLQSEGSIQAPLTLWSSTAYLEQQPLR 182
           +GD+  F+ R ++  ++ F +    G + TV LR++S  +I  PL   +  A    Q   
Sbjct: 122 SGDSFAFAQRPVQVRHFWFPLTLPHG-SNTVLLRVESTSTIFVPLFFSTYGASAAAQENL 180

Query: 183 LYVLGLIYGVLLGMLVYNLFIYLSVRDTSYLYYIFYIASFGMYQLSVNGAAVEYFWPNNP 242
           + + G  YGVL  M +YNLF+++S+R+ +Y +Y+ Y  + G++    +G   +   PN+ 
Sbjct: 181 MGINGAFYGVLFAMFIYNLFLFISLRERAYFWYLVYNVNVGLFAACFDGMLFKLL-PNSV 239

Query: 243 WWANAATPFLIGSAALFGSLFARSFLHTAQH----SRWINRLLLALVACGGVVMLLSLMT 298
              + +   L+    L  + F+R FLH  QH     + +  L+L +V C   V L+ L  
Sbjct: 240 GLQSVSIYVLMFLHCLTAAQFSRHFLHIPQHFPRLDKGLRLLMLVIVGCLLSVPLIGLAA 299

Query: 299 SYALALRLATGLALVFTVTIFVAAIKAWYCGQRVARYFIIAWSAFLLGGVVNTLMVLGYL 358
              LA     G++L+  +T     I AW  G R   Y+++AWS  L   V   L+  G L
Sbjct: 300 WNILASVAVLGISLILLLT----GIYAWRRGVRHGSYYVLAWSVLL---VAFMLVTSGSL 352

Query: 359 PNVFLTMYAS---QIGSAIEVALLSLALADRINSMREQQAQILFDASQKLEVLNQQLARS 415
                 +Y S   ++G  IE+  LS+ LADRIN ++E+     F + Q  E    Q    
Sbjct: 353 GLEIFGIYGSAVVKVGVTIELLSLSIGLADRINLLKEEG----FRSRQAAE----QAEYE 404

Query: 416 NRLKDEFLATLTHELRTPMNGVIGSLELMQTVPLDADLAQYHQTAAGSARDMMRMVNGIL 475
           N+ K  FLA ++HE+RTP+NGV+G L+L++  PL+ +   Y  T + S   +M ++N IL
Sbjct: 405 NQAKGRFLAKMSHEIRTPLNGVLGMLQLLRETPLERNQRFYVDTISSSGSSLMAVINDIL 464

Query: 476 TLTELQAGRLSAQPQVFSLRGTLDTLRQQFTANAQSKGLAFSIDVADELPDRVLGDADKL 535
               +++G+LS +   F L   +      FTA A  K L   + +   +P RV GD  +L
Sbjct: 465 DYARIESGKLSLEEIEFDLEQMVSETMALFTAQALEKRLRLYVSLEGGVPRRVRGDPTRL 524

Query: 536 LQSLDCLLDNAFKFTHEGSVRLRVVGVPQSDGGLRLSFIVTDTGIGFAFLDEATLYQRFF 595
            Q L  LL NA KFT EG V L +     S G   L F V+D+GIG        L++ F 
Sbjct: 525 KQVLMNLLGNALKFTQEGHVALTLSRRSDSQGQQHLVFAVSDSGIGIHDDSLTQLFKSFA 584

Query: 596 QLDGSTTREYGGLGIGLAICRQLIELLGGRLTHHSEPRKGSRFQLEL 642
           Q D STTR YGG G+GLAI ++L+E++GGR+   S P +GSRF  ++
Sbjct: 585 QGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGSRFAFDI 631



 Score = 67.4 bits (163), Expect = 3e-15
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 16/186 (8%)

Query: 616 RQLIELLGGRLTHHSEPR-----KGSRFQLELEVSPVASDSKPAPDRQRAPQECSVLLVD 670
           +QL E  G RL H + P      + +  +L  E    +    PA D++     C +L+ +
Sbjct: 735 QQLPESQGLRLLHLALPLSVTGLRDTLLELYSERRQESPAQPPALDQRSGNTPC-ILVAE 793

Query: 671 DNSVGQLVVRGMLLKLGYRVKTVDTGPNALAALQAGDFDAVLL-----DIPE-GGFSLCC 724
           DN V Q+VV+G L K GY V+ V  G +A+   +  D +A+ L     ++PE  GF    
Sbjct: 794 DNRVNQMVVQGFLRKRGYSVRMVADGQSAVDEYRR-DPNAIQLILMDCEMPELDGFEATR 852

Query: 725 QIRALPGCGEL---PVIALSTSLNVSERERCHGIGVSEHLVKPVRFEALQAVLERRLLCP 781
           QIR L     L   P++AL+  +    R+R    G++E L KP+  + L A+L+R LL  
Sbjct: 853 QIRRLEASRHLSAVPIVALTAHILDEHRDRGMAAGMNEFLGKPLDCQQLYALLDRYLLAQ 912

Query: 782 AEGESA 787
           A    A
Sbjct: 913 ARDRLA 918