Pairwise Alignments

Query, 298 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 306 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  315 bits (808), Expect = 6e-91
 Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 1/290 (0%)

Query: 9   LPLIAAFFALYVIWGSTYLVIRIGVEYWPPLLLAGIRFCTAGALMYGFLRWRGVPAPTWP 68
           LPL  A FALY+IWGSTY VIRIGVE WPPL++AG+RF  AG L+  FL  RG   P   
Sbjct: 7   LPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLR 66

Query: 69  QWKAAGMIGLLLLTVGNGGVSVAEHMGVSSGVAALAVATVPLFTLLCGYFWGARNTRLEW 128
               A +IGLLLL VGNG V+VAEH  V SG+AA+ VATVPLFTL     +G +  +LEW
Sbjct: 67  PLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEW 126

Query: 129 AGVILGIIGIAMLNMGSTLQSSPMGAVLLLVAAASWAFGSVWSRQLPLPQGAMASAAEML 188
            G+ +G+ GI MLN G  L  +P GA+L+L+ + SWAFGSV+  ++ LP G MA A EML
Sbjct: 127 VGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEML 186

Query: 189 VAGVALLMVSALSGERLQAVPPLEGWLALAYLTVFGSIIAFNAYMYLLKHVRPAAATSYA 248
            AGV L++ S ++GE+L A+P L G+LA+ YL +FGSIIA NAYMYL+++V PA ATSYA
Sbjct: 187 AAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYA 246

Query: 249 YVNPAVAVLLGIVFVGETIGLEEALAMLVIISAVLLISLPQWRKP-KPEI 297
           YVNP VAVLLG    GET+   E LA+ VI+ AV+L++L ++  P KP +
Sbjct: 247 YVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVV 296