Pairwise Alignments

Query, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  390 bits (1003), Expect = e-113
 Identities = 197/381 (51%), Positives = 268/381 (70%), Gaps = 3/381 (0%)

Query: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60
           M F  L L   +L+A+   GY TPTP+QAQAIPAVL G DL+  AQTGTGKTA F +P+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  QLLTMEGP---KVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQ 117
             L+M      K      RAL+L PTRELA QV  SV  Y + L L +  ++GGV +NPQ
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 118 MMKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLP 177
           + KL+KGVDILVATPGRL+DL +Q  L L+Q+Q L+LDEADRMLD+GF  ++  I  ++P
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 178 KKRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVH 237
           K++Q+LLFSATFSDDIR LA  +L +P SI+V+PRN     + Q + PV + +K  L  H
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 238 LMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297
           ++ + +W QVLVF +T+ G +++ + L   GI A  +HG+K Q+ R +AL  FKS +++ 
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357
           LVATD+AARG+DI++LP VVN+++P V+EDY+HRIGRTGRAG++GEA+S VC DE   + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 358 AIEMLTRQTLTRHMEQDFEPE 378
            IE  T+QT+   + + F PE
Sbjct: 361 EIERFTKQTIPVQIVEGFGPE 381