Pairwise Alignments

Query, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  348 bits (892), Expect = e-100
 Identities = 200/404 (49%), Positives = 252/404 (62%), Gaps = 5/404 (1%)

Query: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60
           M F +LGL   L+ A    GY  PT +QA AIPA+L GRD+  +AQTG+GKTA F++PLL
Sbjct: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 61  QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLP--LTTYAVYGGVSINPQM 118
           Q L  E P  +    RAL+L PTRELA QV  ++   AQ+LP  L     +GGVSINPQM
Sbjct: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120

Query: 119 MKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPK 178
           M LR G DI+VATPGRL+DL   NAL+L+ + TLVLDEADR+ DLGF+EEL  I  +LP+
Sbjct: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180

Query: 179 KRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHL 238
           +RQ LLFSATF   I+ LA   L DP  I+V         + Q V+ VD  R+ +L  HL
Sbjct: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240

Query: 239 MR--KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQ 296
           ++  +G W +VLVF  T++    + +KL   GI A   HGD  Q TR   L +FK S   
Sbjct: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300

Query: 297 ILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNML 356
           +++ATD+AARG+DI  LP+V+N+DLP    DYIHRIGRTGRAG +G AIS V A      
Sbjct: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360

Query: 357 SAIEMLTRQTLTRHMEQDFEP-EHRVPDTDASGQVVKKPKKPKK 399
             IE     +L R   + FEP E   P  DASG    K K+P K
Sbjct: 361 RLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSK 404