Pairwise Alignments

Query, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 496 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  333 bits (853), Expect = 1e-95
 Identities = 187/394 (47%), Positives = 248/394 (62%), Gaps = 6/394 (1%)

Query: 2   TFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQ 61
           +F+ L L   + RA+  +GY T TP+QAQAIP VL GRD+M AAQTGTGKTA F +PLLQ
Sbjct: 4   SFSELSLSPAIERAVAEMGYATMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLPLLQ 63

Query: 62  -LLTMEGPKV--AANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQM 118
            +L  E      A +  RAL+L PTRELA+QV   V  YA+   L +  V+GG+ + PQ 
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTNLRSTVVFGGMDMKPQT 123

Query: 119 MKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPK 178
            +L+KGV++LVATPGRL+D        LNQ++ +VLDEADRMLD+GF  +L  I   LPK
Sbjct: 124 AELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 179 KRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHL 238
           +R TLLFSATFS +I+ LA   L DP++IEV+  N  A+TV+Q    V+   K  +   +
Sbjct: 184 QRTTLLFSATFSPEIKRLANSYLQDPVTIEVARSNATASTVEQHFYRVEDDDKRGILKQI 243

Query: 239 MRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQIL 298
           +R+   KQ  VF  ++ G   L   L+  G+N   +HGDK Q  R +AL+ FK+  V +L
Sbjct: 244 LRERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKTGAVDLL 303

Query: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSA 358
           V TDVAARGLDI+D+P V NFD+P  AEDY+HRIGRTGRAG +G A+S V   +  ++  
Sbjct: 304 VCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDTRLMGD 363

Query: 359 IEMLTRQTL---TRHMEQDFEPEHRVPDTDASGQ 389
           +E L  + L       E D  P  R  D   + Q
Sbjct: 364 LEKLLGKKLELEALEFEADRRPAGRFNDGQRAWQ 397